Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3920

Experiment: KB with Dimethyl Sulfoxide 1 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3919 and Psyr_3920 are separated by 151 nucleotidesPsyr_3920 and Psyr_3921 are separated by 294 nucleotides Psyr_3919: Psyr_3919 - D-alanine--D-alanine ligase, at 4,661,904 to 4,662,995 _3919 Psyr_3920: Psyr_3920 - LSU ribosomal protein L31P, at 4,663,147 to 4,663,428 _3920 Psyr_3921: Psyr_3921 - membrane protein, putative, at 4,663,723 to 4,664,853 _3921 Position (kb) 4663 4664Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4662.226 kb on + strand, within Psyr_3919at 4662.227 kb on - strand, within Psyr_3919at 4662.227 kb on - strand, within Psyr_3919at 4662.244 kb on + strand, within Psyr_3919at 4662.244 kb on + strand, within Psyr_3919at 4662.244 kb on + strand, within Psyr_3919at 4662.245 kb on - strand, within Psyr_3919at 4662.245 kb on - strand, within Psyr_3919at 4662.693 kb on + strand, within Psyr_3919at 4662.694 kb on - strand, within Psyr_3919at 4662.792 kb on + strand, within Psyr_3919at 4662.792 kb on + strand, within Psyr_3919at 4662.792 kb on + strand, within Psyr_3919at 4662.793 kb on - strand, within Psyr_3919at 4662.793 kb on - strand, within Psyr_3919at 4662.793 kb on - strand, within Psyr_3919at 4662.829 kb on + strand, within Psyr_3919at 4662.830 kb on - strand, within Psyr_3919at 4662.893 kb on - strandat 4663.003 kb on - strandat 4663.028 kb on + strandat 4663.047 kb on + strandat 4663.047 kb on + strandat 4663.048 kb on - strandat 4663.055 kb on + strandat 4663.056 kb on - strandat 4663.056 kb on - strandat 4663.256 kb on + strand, within Psyr_3920at 4663.256 kb on + strand, within Psyr_3920at 4663.256 kb on + strand, within Psyr_3920at 4663.256 kb on + strand, within Psyr_3920at 4663.256 kb on + strand, within Psyr_3920at 4663.257 kb on - strand, within Psyr_3920at 4663.257 kb on - strand, within Psyr_3920at 4663.257 kb on - strand, within Psyr_3920at 4663.295 kb on + strand, within Psyr_3920at 4663.295 kb on + strand, within Psyr_3920at 4663.295 kb on + strand, within Psyr_3920at 4663.296 kb on - strand, within Psyr_3920at 4663.296 kb on - strand, within Psyr_3920at 4663.296 kb on - strand, within Psyr_3920at 4663.301 kb on + strand, within Psyr_3920at 4663.301 kb on + strand, within Psyr_3920at 4663.301 kb on + strand, within Psyr_3920at 4663.301 kb on + strand, within Psyr_3920at 4663.301 kb on + strand, within Psyr_3920at 4663.301 kb on + strand, within Psyr_3920at 4663.301 kb on + strand, within Psyr_3920at 4663.302 kb on - strand, within Psyr_3920at 4663.302 kb on - strand, within Psyr_3920at 4663.305 kb on + strand, within Psyr_3920at 4663.305 kb on + strand, within Psyr_3920at 4663.342 kb on + strand, within Psyr_3920at 4663.457 kb on + strandat 4663.458 kb on - strandat 4663.461 kb on + strandat 4663.462 kb on - strandat 4663.463 kb on + strandat 4663.555 kb on - strandat 4663.590 kb on + strandat 4663.591 kb on - strandat 4663.591 kb on - strandat 4663.593 kb on + strandat 4663.594 kb on - strandat 4663.594 kb on - strandat 4663.686 kb on + strandat 4663.687 kb on - strandat 4663.693 kb on - strandat 4663.693 kb on - strandat 4663.693 kb on - strandat 4663.728 kb on + strandat 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.969 kb on + strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.970 kb on - strand, within Psyr_3921at 4663.980 kb on + strand, within Psyr_3921at 4663.980 kb on + strand, within Psyr_3921at 4663.980 kb on + strand, within Psyr_3921at 4663.981 kb on - strand, within Psyr_3921at 4663.981 kb on - strand, within Psyr_3921at 4663.981 kb on - strand, within Psyr_3921at 4663.981 kb on - strand, within Psyr_3921at 4663.981 kb on - strand, within Psyr_3921at 4663.981 kb on - strand, within Psyr_3921at 4664.071 kb on + strand, within Psyr_3921at 4664.071 kb on + strand, within Psyr_3921at 4664.071 kb on + strand, within Psyr_3921at 4664.071 kb on + strand, within Psyr_3921at 4664.071 kb on + strand, within Psyr_3921at 4664.071 kb on + strand, within Psyr_3921at 4664.072 kb on - strand, within Psyr_3921at 4664.072 kb on - strand, within Psyr_3921at 4664.072 kb on - strand, within Psyr_3921at 4664.072 kb on - strand, within Psyr_3921at 4664.072 kb on - strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.155 kb on + strand, within Psyr_3921at 4664.156 kb on - strand, within Psyr_3921at 4664.156 kb on - strand, within Psyr_3921at 4664.156 kb on - strand, within Psyr_3921at 4664.156 kb on - strand, within Psyr_3921at 4664.156 kb on - strand, within Psyr_3921at 4664.157 kb on + strand, within Psyr_3921at 4664.157 kb on + strand, within Psyr_3921at 4664.242 kb on + strand, within Psyr_3921at 4664.281 kb on + strand, within Psyr_3921at 4664.302 kb on + strand, within Psyr_3921at 4664.302 kb on + strand, within Psyr_3921at 4664.302 kb on + strand, within Psyr_3921at 4664.302 kb on + strand, within Psyr_3921at 4664.302 kb on + strand, within Psyr_3921at 4664.302 kb on + strand, within Psyr_3921at 4664.303 kb on - strand, within Psyr_3921

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol%
remove
4,662,226 + Psyr_3919 0.29 -0.0
4,662,227 - Psyr_3919 0.30 +1.1
4,662,227 - Psyr_3919 0.30 -1.6
4,662,244 + Psyr_3919 0.31 -1.3
4,662,244 + Psyr_3919 0.31 -2.0
4,662,244 + Psyr_3919 0.31 -0.2
4,662,245 - Psyr_3919 0.31 +1.0
4,662,245 - Psyr_3919 0.31 -1.4
4,662,693 + Psyr_3919 0.72 -0.7
4,662,694 - Psyr_3919 0.72 +0.0
4,662,792 + Psyr_3919 0.81 +0.1
4,662,792 + Psyr_3919 0.81 +2.8
4,662,792 + Psyr_3919 0.81 +1.0
4,662,793 - Psyr_3919 0.81 +1.8
4,662,793 - Psyr_3919 0.81 -0.0
4,662,793 - Psyr_3919 0.81 +0.8
4,662,829 + Psyr_3919 0.85 -2.2
4,662,830 - Psyr_3919 0.85 +0.3
4,662,893 - -0.8
4,663,003 - +0.4
4,663,028 + -0.8
4,663,047 + +0.4
4,663,047 + +0.0
4,663,048 - -2.0
4,663,055 + -0.1
4,663,056 - +1.8
4,663,056 - -0.4
4,663,256 + Psyr_3920 0.39 -0.1
4,663,256 + Psyr_3920 0.39 +0.8
4,663,256 + Psyr_3920 0.39 -0.7
4,663,256 + Psyr_3920 0.39 +0.8
4,663,256 + Psyr_3920 0.39 +0.5
4,663,257 - Psyr_3920 0.39 +0.1
4,663,257 - Psyr_3920 0.39 -0.9
4,663,257 - Psyr_3920 0.39 +0.8
4,663,295 + Psyr_3920 0.52 +1.2
4,663,295 + Psyr_3920 0.52 +0.8
4,663,295 + Psyr_3920 0.52 +0.2
4,663,296 - Psyr_3920 0.53 +0.4
4,663,296 - Psyr_3920 0.53 +0.6
4,663,296 - Psyr_3920 0.53 +1.3
4,663,301 + Psyr_3920 0.55 -0.5
4,663,301 + Psyr_3920 0.55 -0.6
4,663,301 + Psyr_3920 0.55 +0.6
4,663,301 + Psyr_3920 0.55 -2.2
4,663,301 + Psyr_3920 0.55 +2.5
4,663,301 + Psyr_3920 0.55 -1.0
4,663,301 + Psyr_3920 0.55 +0.3
4,663,302 - Psyr_3920 0.55 -0.6
4,663,302 - Psyr_3920 0.55 +0.1
4,663,305 + Psyr_3920 0.56 +0.3
4,663,305 + Psyr_3920 0.56 +2.3
4,663,342 + Psyr_3920 0.69 +1.3
4,663,457 + -0.2
4,663,458 - -1.6
4,663,461 + -0.6
4,663,462 - -0.5
4,663,463 + +1.8
4,663,555 - +0.8
4,663,590 + -0.1
4,663,591 - +0.2
4,663,591 - +0.1
4,663,593 + -0.5
4,663,594 - -0.7
4,663,594 - +0.8
4,663,686 + -0.0
4,663,687 - +0.1
4,663,693 - +0.3
4,663,693 - -0.0
4,663,693 - +1.2
4,663,728 + +0.3
4,663,969 + Psyr_3921 0.22 +0.8
4,663,969 + Psyr_3921 0.22 -0.4
4,663,969 + Psyr_3921 0.22 -1.5
4,663,969 + Psyr_3921 0.22 -0.2
4,663,969 + Psyr_3921 0.22 +0.8
4,663,969 + Psyr_3921 0.22 -0.8
4,663,969 + Psyr_3921 0.22 +0.2
4,663,969 + Psyr_3921 0.22 +1.5
4,663,969 + Psyr_3921 0.22 -1.0
4,663,969 + Psyr_3921 0.22 -0.2
4,663,969 + Psyr_3921 0.22 +0.2
4,663,969 + Psyr_3921 0.22 -0.2
4,663,969 + Psyr_3921 0.22 -0.6
4,663,969 + Psyr_3921 0.22 +0.6
4,663,969 + Psyr_3921 0.22 +0.6
4,663,969 + Psyr_3921 0.22 +0.6
4,663,970 - Psyr_3921 0.22 -0.2
4,663,970 - Psyr_3921 0.22 -0.4
4,663,970 - Psyr_3921 0.22 +0.8
4,663,970 - Psyr_3921 0.22 +1.0
4,663,970 - Psyr_3921 0.22 +0.3
4,663,970 - Psyr_3921 0.22 -0.1
4,663,970 - Psyr_3921 0.22 -1.1
4,663,970 - Psyr_3921 0.22 -0.1
4,663,970 - Psyr_3921 0.22 -0.6
4,663,970 - Psyr_3921 0.22 +0.8
4,663,970 - Psyr_3921 0.22 +1.8
4,663,970 - Psyr_3921 0.22 -0.1
4,663,970 - Psyr_3921 0.22 +0.1
4,663,970 - Psyr_3921 0.22 +0.1
4,663,980 + Psyr_3921 0.23 -0.7
4,663,980 + Psyr_3921 0.23 -0.2
4,663,980 + Psyr_3921 0.23 +0.3
4,663,981 - Psyr_3921 0.23 +0.5
4,663,981 - Psyr_3921 0.23 -1.2
4,663,981 - Psyr_3921 0.23 -0.2
4,663,981 - Psyr_3921 0.23 +1.8
4,663,981 - Psyr_3921 0.23 +0.4
4,663,981 - Psyr_3921 0.23 +1.0
4,664,071 + Psyr_3921 0.31 -0.2
4,664,071 + Psyr_3921 0.31 -1.0
4,664,071 + Psyr_3921 0.31 -2.4
4,664,071 + Psyr_3921 0.31 +0.8
4,664,071 + Psyr_3921 0.31 -0.2
4,664,071 + Psyr_3921 0.31 -0.5
4,664,072 - Psyr_3921 0.31 +1.2
4,664,072 - Psyr_3921 0.31 +1.5
4,664,072 - Psyr_3921 0.31 +0.4
4,664,072 - Psyr_3921 0.31 +0.7
4,664,072 - Psyr_3921 0.31 -0.7
4,664,155 + Psyr_3921 0.38 -0.9
4,664,155 + Psyr_3921 0.38 +0.8
4,664,155 + Psyr_3921 0.38 -0.5
4,664,155 + Psyr_3921 0.38 -1.8
4,664,155 + Psyr_3921 0.38 +0.3
4,664,155 + Psyr_3921 0.38 -0.2
4,664,155 + Psyr_3921 0.38 -0.1
4,664,155 + Psyr_3921 0.38 -0.5
4,664,155 + Psyr_3921 0.38 -0.2
4,664,155 + Psyr_3921 0.38 +0.3
4,664,155 + Psyr_3921 0.38 -0.2
4,664,155 + Psyr_3921 0.38 -1.1
4,664,155 + Psyr_3921 0.38 -0.6
4,664,155 + Psyr_3921 0.38 +1.5
4,664,155 + Psyr_3921 0.38 +0.4
4,664,155 + Psyr_3921 0.38 -0.8
4,664,155 + Psyr_3921 0.38 +0.6
4,664,155 + Psyr_3921 0.38 +1.2
4,664,156 - Psyr_3921 0.38 -0.6
4,664,156 - Psyr_3921 0.38 +0.8
4,664,156 - Psyr_3921 0.38 +0.8
4,664,156 - Psyr_3921 0.38 -1.7
4,664,156 - Psyr_3921 0.38 +1.3
4,664,157 + Psyr_3921 0.38 +1.6
4,664,157 + Psyr_3921 0.38 -0.1
4,664,242 + Psyr_3921 0.46 -0.8
4,664,281 + Psyr_3921 0.49 +0.4
4,664,302 + Psyr_3921 0.51 -0.5
4,664,302 + Psyr_3921 0.51 -0.8
4,664,302 + Psyr_3921 0.51 -0.2
4,664,302 + Psyr_3921 0.51 -0.7
4,664,302 + Psyr_3921 0.51 -0.6
4,664,302 + Psyr_3921 0.51 +2.1
4,664,303 - Psyr_3921 0.51 -1.4

Or see this region's nucleotide sequence