Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3764 and Psyr_3765 are separated by 54 nucleotides Psyr_3765 and Psyr_3766 are separated by 203 nucleotides Psyr_3766 and Psyr_3767 are separated by 182 nucleotides Psyr_3767 and Psyr_3768 are separated by 458 nucleotides
Psyr_3764: Psyr_3764 - conserved hypothetical protein, at 4,482,357 to 4,483,226
_3764
Psyr_3765: Psyr_3765 - hypothetical protein, at 4,483,281 to 4,483,715
_3765
Psyr_3766: Psyr_3766 - hypothetical protein, at 4,483,919 to 4,484,650
_3766
Psyr_3767: Psyr_3767 - regulatory protein, LuxR, at 4,484,833 to 4,485,102
_3767
Psyr_3768: Psyr_3768 - General substrate transporter:Major facilitator superfamily, at 4,485,561 to 4,486,877
_3768
Position (kb) 4483
4484
4485 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4482.944 kb on - strand, within Psyr_3764 at 4482.979 kb on - strand, within Psyr_3764 at 4483.062 kb on + strand, within Psyr_3764 at 4483.063 kb on - strand, within Psyr_3764 at 4483.169 kb on + strand at 4483.169 kb on + strand at 4483.170 kb on - strand at 4483.215 kb on + strand at 4483.215 kb on + strand at 4483.215 kb on + strand at 4483.216 kb on - strand at 4483.216 kb on - strand at 4483.286 kb on - strand at 4483.286 kb on - strand at 4483.291 kb on - strand at 4483.379 kb on - strand, within Psyr_3765 at 4483.379 kb on - strand, within Psyr_3765 at 4483.382 kb on + strand, within Psyr_3765 at 4483.382 kb on + strand, within Psyr_3765 at 4483.382 kb on + strand, within Psyr_3765 at 4483.383 kb on - strand, within Psyr_3765 at 4483.383 kb on - strand, within Psyr_3765 at 4483.383 kb on - strand, within Psyr_3765 at 4483.383 kb on - strand, within Psyr_3765 at 4483.433 kb on + strand, within Psyr_3765 at 4483.433 kb on + strand, within Psyr_3765 at 4483.433 kb on + strand, within Psyr_3765 at 4483.433 kb on + strand, within Psyr_3765 at 4483.434 kb on - strand, within Psyr_3765 at 4483.439 kb on + strand, within Psyr_3765 at 4483.439 kb on + strand, within Psyr_3765 at 4483.439 kb on + strand, within Psyr_3765 at 4483.439 kb on + strand, within Psyr_3765 at 4483.439 kb on + strand, within Psyr_3765 at 4483.439 kb on + strand, within Psyr_3765 at 4483.439 kb on + strand, within Psyr_3765 at 4483.440 kb on - strand, within Psyr_3765 at 4483.440 kb on - strand, within Psyr_3765 at 4483.440 kb on - strand, within Psyr_3765 at 4483.440 kb on - strand, within Psyr_3765 at 4483.440 kb on - strand, within Psyr_3765 at 4483.440 kb on - strand, within Psyr_3765 at 4483.440 kb on - strand, within Psyr_3765 at 4483.456 kb on - strand, within Psyr_3765 at 4483.568 kb on - strand, within Psyr_3765 at 4483.622 kb on + strand, within Psyr_3765 at 4483.654 kb on + strand, within Psyr_3765 at 4483.734 kb on + strand at 4483.740 kb on + strand at 4483.795 kb on - strand at 4483.984 kb on + strand at 4483.984 kb on + strand at 4483.984 kb on + strand at 4484.002 kb on + strand, within Psyr_3766 at 4484.034 kb on + strand, within Psyr_3766 at 4484.034 kb on + strand, within Psyr_3766 at 4484.035 kb on - strand, within Psyr_3766 at 4484.091 kb on + strand, within Psyr_3766 at 4484.092 kb on - strand, within Psyr_3766 at 4484.092 kb on - strand, within Psyr_3766 at 4484.199 kb on + strand, within Psyr_3766 at 4484.199 kb on + strand, within Psyr_3766 at 4484.199 kb on + strand, within Psyr_3766 at 4484.199 kb on + strand, within Psyr_3766 at 4484.200 kb on - strand, within Psyr_3766 at 4484.200 kb on - strand, within Psyr_3766 at 4484.236 kb on + strand, within Psyr_3766 at 4484.237 kb on - strand, within Psyr_3766 at 4484.239 kb on - strand, within Psyr_3766 at 4484.363 kb on + strand, within Psyr_3766 at 4484.363 kb on + strand, within Psyr_3766 at 4484.572 kb on + strand, within Psyr_3766 at 4484.572 kb on + strand, within Psyr_3766 at 4484.573 kb on - strand, within Psyr_3766 at 4484.575 kb on + strand, within Psyr_3766 at 4484.576 kb on - strand, within Psyr_3766 at 4484.576 kb on - strand, within Psyr_3766 at 4484.761 kb on + strand at 4484.762 kb on - strand at 4484.812 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.872 kb on - strand, within Psyr_3767 at 4484.872 kb on - strand, within Psyr_3767 at 4484.903 kb on - strand, within Psyr_3767 at 4484.903 kb on - strand, within Psyr_3767 at 4484.903 kb on - strand, within Psyr_3767 at 4484.908 kb on + strand, within Psyr_3767 at 4484.909 kb on - strand, within Psyr_3767 at 4484.941 kb on + strand, within Psyr_3767 at 4484.941 kb on + strand, within Psyr_3767 at 4484.942 kb on - strand, within Psyr_3767 at 4484.987 kb on + strand, within Psyr_3767 at 4485.027 kb on + strand, within Psyr_3767 at 4485.027 kb on + strand, within Psyr_3767 at 4485.028 kb on - strand, within Psyr_3767 at 4485.028 kb on - strand, within Psyr_3767 at 4485.028 kb on - strand, within Psyr_3767 at 4485.084 kb on + strand at 4485.085 kb on - strand at 4485.085 kb on - strand at 4485.124 kb on + strand at 4485.137 kb on - strand at 4485.316 kb on + strand at 4485.317 kb on - strand at 4485.317 kb on - strand at 4485.317 kb on - strand at 4485.320 kb on + strand at 4485.387 kb on + strand at 4485.388 kb on - strand at 4485.388 kb on - strand at 4485.388 kb on - strand at 4485.444 kb on + strand at 4485.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 4,482,944 - Psyr_3764 0.67 -0.4 4,482,979 - Psyr_3764 0.71 +0.1 4,483,062 + Psyr_3764 0.81 -0.1 4,483,063 - Psyr_3764 0.81 -0.4 4,483,169 + -0.0 4,483,169 + +0.9 4,483,170 - -0.7 4,483,215 + -0.2 4,483,215 + +1.1 4,483,215 + -1.9 4,483,216 - +1.0 4,483,216 - +1.2 4,483,286 - +0.9 4,483,286 - -0.6 4,483,291 - -0.5 4,483,379 - Psyr_3765 0.23 +0.3 4,483,379 - Psyr_3765 0.23 -0.9 4,483,382 + Psyr_3765 0.23 +0.4 4,483,382 + Psyr_3765 0.23 +1.0 4,483,382 + Psyr_3765 0.23 +0.7 4,483,383 - Psyr_3765 0.23 +0.5 4,483,383 - Psyr_3765 0.23 +0.7 4,483,383 - Psyr_3765 0.23 +0.4 4,483,383 - Psyr_3765 0.23 +2.3 4,483,433 + Psyr_3765 0.35 +0.7 4,483,433 + Psyr_3765 0.35 -0.7 4,483,433 + Psyr_3765 0.35 -0.5 4,483,433 + Psyr_3765 0.35 +0.7 4,483,434 - Psyr_3765 0.35 -0.1 4,483,439 + Psyr_3765 0.36 +0.1 4,483,439 + Psyr_3765 0.36 +0.8 4,483,439 + Psyr_3765 0.36 +0.7 4,483,439 + Psyr_3765 0.36 +1.0 4,483,439 + Psyr_3765 0.36 -0.3 4,483,439 + Psyr_3765 0.36 +0.3 4,483,439 + Psyr_3765 0.36 +0.2 4,483,440 - Psyr_3765 0.37 -1.6 4,483,440 - Psyr_3765 0.37 +1.7 4,483,440 - Psyr_3765 0.37 -1.1 4,483,440 - Psyr_3765 0.37 -0.0 4,483,440 - Psyr_3765 0.37 +1.3 4,483,440 - Psyr_3765 0.37 +0.1 4,483,440 - Psyr_3765 0.37 +1.6 4,483,456 - Psyr_3765 0.40 +0.8 4,483,568 - Psyr_3765 0.66 +0.6 4,483,622 + Psyr_3765 0.78 +0.6 4,483,654 + Psyr_3765 0.86 +0.9 4,483,734 + +1.3 4,483,740 + -0.3 4,483,795 - +0.7 4,483,984 + -0.1 4,483,984 + -0.5 4,483,984 + -0.8 4,484,002 + Psyr_3766 0.11 -0.2 4,484,034 + Psyr_3766 0.16 -0.2 4,484,034 + Psyr_3766 0.16 +0.3 4,484,035 - Psyr_3766 0.16 +0.3 4,484,091 + Psyr_3766 0.23 +1.7 4,484,092 - Psyr_3766 0.24 +0.1 4,484,092 - Psyr_3766 0.24 -0.9 4,484,199 + Psyr_3766 0.38 -0.6 4,484,199 + Psyr_3766 0.38 +2.3 4,484,199 + Psyr_3766 0.38 -0.3 4,484,199 + Psyr_3766 0.38 +0.5 4,484,200 - Psyr_3766 0.38 -2.3 4,484,200 - Psyr_3766 0.38 -0.5 4,484,236 + Psyr_3766 0.43 -2.1 4,484,237 - Psyr_3766 0.43 -1.3 4,484,239 - Psyr_3766 0.44 -0.9 4,484,363 + Psyr_3766 0.61 -0.7 4,484,363 + Psyr_3766 0.61 +1.3 4,484,572 + Psyr_3766 0.89 -0.4 4,484,572 + Psyr_3766 0.89 -0.7 4,484,573 - Psyr_3766 0.89 +0.8 4,484,575 + Psyr_3766 0.90 -0.5 4,484,576 - Psyr_3766 0.90 -1.0 4,484,576 - Psyr_3766 0.90 +0.5 4,484,761 + -1.1 4,484,762 - +0.9 4,484,812 + -0.2 4,484,834 + -0.5 4,484,834 + +0.7 4,484,834 + +0.4 4,484,834 + +0.9 4,484,834 + -1.1 4,484,834 + -0.9 4,484,834 + -0.6 4,484,834 + -1.3 4,484,834 + -0.1 4,484,834 + -1.2 4,484,834 + -0.7 4,484,834 + +0.4 4,484,834 + -1.3 4,484,834 + +0.3 4,484,834 + +1.3 4,484,835 - +1.0 4,484,835 - +0.3 4,484,835 - +0.0 4,484,835 - +0.1 4,484,835 - -0.4 4,484,835 - -0.2 4,484,835 - +0.0 4,484,835 - +0.7 4,484,835 - +0.4 4,484,835 - +1.7 4,484,835 - -0.2 4,484,838 + +0.0 4,484,838 + +0.1 4,484,838 + +1.7 4,484,838 + +0.1 4,484,838 + +1.5 4,484,838 + -2.2 4,484,838 + -1.3 4,484,839 - +0.3 4,484,839 - -1.3 4,484,839 - -0.3 4,484,839 - +0.5 4,484,839 - -0.6 4,484,839 - +0.5 4,484,839 - -0.0 4,484,839 - +0.9 4,484,839 - -2.6 4,484,872 - Psyr_3767 0.14 -0.1 4,484,872 - Psyr_3767 0.14 +1.4 4,484,903 - Psyr_3767 0.26 -0.2 4,484,903 - Psyr_3767 0.26 -0.5 4,484,903 - Psyr_3767 0.26 -0.0 4,484,908 + Psyr_3767 0.28 -0.5 4,484,909 - Psyr_3767 0.28 -0.5 4,484,941 + Psyr_3767 0.40 -0.6 4,484,941 + Psyr_3767 0.40 +0.5 4,484,942 - Psyr_3767 0.40 -0.6 4,484,987 + Psyr_3767 0.57 -0.5 4,485,027 + Psyr_3767 0.72 -2.6 4,485,027 + Psyr_3767 0.72 +0.0 4,485,028 - Psyr_3767 0.72 +1.3 4,485,028 - Psyr_3767 0.72 +0.6 4,485,028 - Psyr_3767 0.72 +0.1 4,485,084 + +0.7 4,485,085 - +0.2 4,485,085 - +1.7 4,485,124 + +1.1 4,485,137 - -0.1 4,485,316 + -1.7 4,485,317 - -1.2 4,485,317 - +1.7 4,485,317 - -0.6 4,485,320 + -0.4 4,485,387 + +0.7 4,485,388 - +0.4 4,485,388 - +1.9 4,485,388 - +0.9 4,485,444 + +1.2 4,485,619 - -0.4
Or see this region's nucleotide sequence