Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3588 and Psyr_3589 are separated by 86 nucleotides Psyr_3589 and Psyr_3590 are separated by 171 nucleotides Psyr_3590 and Psyr_3591 are separated by 86 nucleotides
Psyr_3588: Psyr_3588 - YCII-related protein, at 4,270,306 to 4,270,605
_3588
Psyr_3589: Psyr_3589 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,270,692 to 4,271,369
_3589
Psyr_3590: Psyr_3590 - conserved hypothetical protein, at 4,271,541 to 4,272,026
_3590
Psyr_3591: Psyr_3591 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,272,113 to 4,273,462
_3591
Position (kb) 4271
4272
4273 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4270.597 kb on - strand at 4270.708 kb on + strand at 4270.708 kb on + strand at 4270.708 kb on + strand at 4270.708 kb on + strand at 4270.709 kb on - strand at 4270.709 kb on - strand at 4270.709 kb on - strand at 4270.709 kb on - strand at 4270.775 kb on - strand, within Psyr_3589 at 4270.986 kb on + strand, within Psyr_3589 at 4271.253 kb on + strand, within Psyr_3589 at 4271.254 kb on - strand, within Psyr_3589 at 4271.355 kb on + strand at 4271.355 kb on + strand at 4271.355 kb on + strand at 4271.355 kb on + strand at 4271.355 kb on + strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.358 kb on + strand at 4271.358 kb on + strand at 4271.359 kb on - strand at 4271.376 kb on - strand at 4271.389 kb on + strand at 4271.389 kb on + strand at 4271.389 kb on + strand at 4271.389 kb on + strand at 4271.389 kb on + strand at 4271.389 kb on + strand at 4271.445 kb on + strand at 4271.445 kb on + strand at 4271.446 kb on - strand at 4271.446 kb on - strand at 4271.446 kb on - strand at 4271.536 kb on - strand at 4271.536 kb on - strand at 4271.693 kb on + strand, within Psyr_3590 at 4271.693 kb on + strand, within Psyr_3590 at 4271.694 kb on - strand, within Psyr_3590 at 4271.694 kb on - strand, within Psyr_3590 at 4271.818 kb on - strand, within Psyr_3590 at 4272.168 kb on + strand at 4272.169 kb on - strand at 4272.196 kb on + strand at 4272.196 kb on + strand at 4272.196 kb on + strand at 4272.196 kb on + strand at 4272.196 kb on + strand at 4272.197 kb on - strand at 4272.197 kb on - strand at 4272.197 kb on - strand at 4272.197 kb on - strand at 4272.197 kb on - strand at 4272.503 kb on + strand, within Psyr_3591 at 4272.504 kb on - strand, within Psyr_3591 at 4272.504 kb on - strand, within Psyr_3591 at 4272.504 kb on - strand, within Psyr_3591 at 4272.511 kb on + strand, within Psyr_3591 at 4272.512 kb on - strand, within Psyr_3591 at 4272.671 kb on + strand, within Psyr_3591 at 4272.692 kb on + strand, within Psyr_3591 at 4272.692 kb on + strand, within Psyr_3591
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 4,270,597 - -0.1 4,270,708 + -0.2 4,270,708 + -0.1 4,270,708 + -0.2 4,270,708 + -1.1 4,270,709 - +0.9 4,270,709 - +0.3 4,270,709 - -0.1 4,270,709 - -0.1 4,270,775 - Psyr_3589 0.12 +0.6 4,270,986 + Psyr_3589 0.43 +0.3 4,271,253 + Psyr_3589 0.83 -1.4 4,271,254 - Psyr_3589 0.83 +0.6 4,271,355 + +0.2 4,271,355 + +0.1 4,271,355 + +0.7 4,271,355 + +4.0 4,271,355 + +0.1 4,271,356 - -0.4 4,271,356 - +0.4 4,271,356 - +0.7 4,271,356 - +1.1 4,271,356 - -0.6 4,271,356 - -0.9 4,271,356 - -1.1 4,271,356 - -0.7 4,271,356 - +0.7 4,271,358 + -0.2 4,271,358 + +0.1 4,271,359 - +0.7 4,271,376 - -0.7 4,271,389 + +0.1 4,271,389 + +0.3 4,271,389 + -0.1 4,271,389 + -0.2 4,271,389 + +1.5 4,271,389 + -0.8 4,271,445 + -0.6 4,271,445 + +1.0 4,271,446 - +0.0 4,271,446 - +0.5 4,271,446 - +0.3 4,271,536 - -1.3 4,271,536 - +0.3 4,271,693 + Psyr_3590 0.31 -0.9 4,271,693 + Psyr_3590 0.31 -1.0 4,271,694 - Psyr_3590 0.31 -2.0 4,271,694 - Psyr_3590 0.31 -0.7 4,271,818 - Psyr_3590 0.57 +0.1 4,272,168 + +0.9 4,272,169 - +0.0 4,272,196 + +0.0 4,272,196 + +0.1 4,272,196 + +0.1 4,272,196 + +0.7 4,272,196 + +0.5 4,272,197 - -1.9 4,272,197 - +0.4 4,272,197 - +0.9 4,272,197 - +1.3 4,272,197 - +0.3 4,272,503 + Psyr_3591 0.29 +0.8 4,272,504 - Psyr_3591 0.29 -1.3 4,272,504 - Psyr_3591 0.29 +2.1 4,272,504 - Psyr_3591 0.29 +0.4 4,272,511 + Psyr_3591 0.29 -0.1 4,272,512 - Psyr_3591 0.30 -1.2 4,272,671 + Psyr_3591 0.41 -0.9 4,272,692 + Psyr_3591 0.43 +1.6 4,272,692 + Psyr_3591 0.43 +0.2
Or see this region's nucleotide sequence