Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3230

Experiment: KB with Dimethyl Sulfoxide 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3229 and Psyr_3230 are separated by 73 nucleotidesPsyr_3230 and Psyr_3231 are separated by 13 nucleotides Psyr_3229: Psyr_3229 - Glycosyl transferase, group 1, at 3,867,642 to 3,868,757 _3229 Psyr_3230: Psyr_3230 - Glycosyl transferase, group 1, at 3,868,831 to 3,870,060 _3230 Psyr_3231: Psyr_3231 - sugar transferase, at 3,870,074 to 3,871,483 _3231 Position (kb) 3868 3869 3870 3871Strain fitness (log2 ratio) -2 -1 0 1 2at 3867.856 kb on - strand, within Psyr_3229at 3867.916 kb on - strand, within Psyr_3229at 3867.916 kb on - strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strandat 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.972 kb on + strand, within Psyr_3229at 3867.973 kb on - strand, within Psyr_3229at 3867.973 kb on - strand, within Psyr_3229at 3867.973 kb on - strand, within Psyr_3229at 3868.073 kb on - strand, within Psyr_3229at 3868.083 kb on + strand, within Psyr_3229at 3868.083 kb on + strand, within Psyr_3229at 3868.083 kb on + strand, within Psyr_3229at 3868.084 kb on - strand, within Psyr_3229at 3868.084 kb on - strand, within Psyr_3229at 3868.386 kb on + strand, within Psyr_3229at 3868.422 kb on + strand, within Psyr_3229at 3868.527 kb on + strand, within Psyr_3229at 3868.527 kb on + strand, within Psyr_3229at 3868.683 kb on - strandat 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.162 kb on - strand, within Psyr_3230at 3869.162 kb on - strand, within Psyr_3230at 3869.162 kb on - strand, within Psyr_3230at 3869.206 kb on + strand, within Psyr_3230at 3869.207 kb on - strand, within Psyr_3230at 3869.269 kb on + strand, within Psyr_3230at 3869.269 kb on + strand, within Psyr_3230at 3869.269 kb on + strand, within Psyr_3230at 3869.269 kb on + strand, within Psyr_3230at 3869.269 kb on + strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.384 kb on - strand, within Psyr_3230at 3869.437 kb on + strand, within Psyr_3230at 3869.437 kb on + strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.464 kb on + strand, within Psyr_3230at 3869.465 kb on - strand, within Psyr_3230at 3869.628 kb on + strand, within Psyr_3230at 3869.628 kb on + strand, within Psyr_3230at 3869.628 kb on + strand, within Psyr_3230at 3869.629 kb on - strand, within Psyr_3230at 3870.079 kb on + strandat 3870.080 kb on - strandat 3870.080 kb on - strandat 3870.080 kb on - strandat 3870.260 kb on + strand, within Psyr_3231at 3870.261 kb on - strand, within Psyr_3231at 3870.272 kb on + strand, within Psyr_3231at 3870.273 kb on - strand, within Psyr_3231at 3870.273 kb on - strand, within Psyr_3231at 3870.273 kb on - strand, within Psyr_3231at 3870.600 kb on - strand, within Psyr_3231at 3870.600 kb on - strand, within Psyr_3231at 3870.655 kb on - strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.713 kb on + strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.714 kb on - strand, within Psyr_3231at 3870.715 kb on + strand, within Psyr_3231at 3870.716 kb on - strand, within Psyr_3231

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol%
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3,867,856 - Psyr_3229 0.19 -1.0
3,867,916 - Psyr_3229 0.25 +1.2
3,867,916 - Psyr_3229 0.25 +1.1
3,867,951 + Psyr_3229 0.28 -1.4
3,867,951 + Psyr_3229 0.28 -1.0
3,867,951 + Psyr_3229 0.28 +0.7
3,867,951 + Psyr_3229 0.28 -0.2
3,867,951 + +2.6
3,867,951 + Psyr_3229 0.28 -0.6
3,867,951 + Psyr_3229 0.28 +0.8
3,867,951 + Psyr_3229 0.28 -1.4
3,867,951 + Psyr_3229 0.28 -0.3
3,867,952 - Psyr_3229 0.28 -0.8
3,867,952 - Psyr_3229 0.28 +1.3
3,867,952 - Psyr_3229 0.28 +1.2
3,867,952 - Psyr_3229 0.28 +0.6
3,867,952 - Psyr_3229 0.28 +0.2
3,867,952 - Psyr_3229 0.28 +0.6
3,867,952 - Psyr_3229 0.28 +0.6
3,867,972 + Psyr_3229 0.30 -0.0
3,867,973 - Psyr_3229 0.30 +0.2
3,867,973 - Psyr_3229 0.30 +0.1
3,867,973 - Psyr_3229 0.30 +0.7
3,868,073 - Psyr_3229 0.39 -0.2
3,868,083 + Psyr_3229 0.40 +0.7
3,868,083 + Psyr_3229 0.40 +0.4
3,868,083 + Psyr_3229 0.40 +0.6
3,868,084 - Psyr_3229 0.40 +1.6
3,868,084 - Psyr_3229 0.40 +1.1
3,868,386 + Psyr_3229 0.67 +1.6
3,868,422 + Psyr_3229 0.70 -0.0
3,868,527 + Psyr_3229 0.79 -1.3
3,868,527 + Psyr_3229 0.79 -0.2
3,868,683 - -1.8
3,869,161 + Psyr_3230 0.27 -0.7
3,869,161 + Psyr_3230 0.27 +1.2
3,869,161 + Psyr_3230 0.27 -0.9
3,869,161 + Psyr_3230 0.27 +1.0
3,869,161 + Psyr_3230 0.27 +0.4
3,869,161 + Psyr_3230 0.27 -0.4
3,869,161 + Psyr_3230 0.27 +0.4
3,869,161 + Psyr_3230 0.27 -1.2
3,869,161 + Psyr_3230 0.27 -1.4
3,869,162 - Psyr_3230 0.27 -0.1
3,869,162 - Psyr_3230 0.27 +0.5
3,869,162 - Psyr_3230 0.27 +0.9
3,869,206 + Psyr_3230 0.30 -0.8
3,869,207 - Psyr_3230 0.31 +2.6
3,869,269 + Psyr_3230 0.36 +0.2
3,869,269 + Psyr_3230 0.36 -0.0
3,869,269 + Psyr_3230 0.36 -1.4
3,869,269 + Psyr_3230 0.36 +0.2
3,869,269 + Psyr_3230 0.36 +0.8
3,869,270 - Psyr_3230 0.36 +2.2
3,869,270 - Psyr_3230 0.36 +0.8
3,869,270 - Psyr_3230 0.36 -0.1
3,869,270 - Psyr_3230 0.36 +1.3
3,869,270 - Psyr_3230 0.36 +0.6
3,869,270 - Psyr_3230 0.36 -0.8
3,869,384 - Psyr_3230 0.45 +0.2
3,869,437 + Psyr_3230 0.49 +0.6
3,869,437 + Psyr_3230 0.49 +1.2
3,869,438 - Psyr_3230 0.49 +0.6
3,869,438 - Psyr_3230 0.49 -1.8
3,869,438 - Psyr_3230 0.49 +0.7
3,869,438 - Psyr_3230 0.49 +0.9
3,869,438 - Psyr_3230 0.49 +1.9
3,869,438 - Psyr_3230 0.49 -0.0
3,869,438 - Psyr_3230 0.49 +0.1
3,869,438 - Psyr_3230 0.49 +0.6
3,869,438 - Psyr_3230 0.49 +0.2
3,869,464 + Psyr_3230 0.51 -0.5
3,869,465 - Psyr_3230 0.52 +1.6
3,869,628 + Psyr_3230 0.65 +1.7
3,869,628 + Psyr_3230 0.65 +1.6
3,869,628 + Psyr_3230 0.65 -0.3
3,869,629 - Psyr_3230 0.65 -0.1
3,870,079 + +0.6
3,870,080 - -1.3
3,870,080 - +0.4
3,870,080 - +1.2
3,870,260 + Psyr_3231 0.13 +0.6
3,870,261 - Psyr_3231 0.13 +0.6
3,870,272 + Psyr_3231 0.14 +0.6
3,870,273 - Psyr_3231 0.14 -0.8
3,870,273 - Psyr_3231 0.14 -0.8
3,870,273 - Psyr_3231 0.14 +1.3
3,870,600 - Psyr_3231 0.37 -0.4
3,870,600 - Psyr_3231 0.37 +0.9
3,870,655 - Psyr_3231 0.41 -0.9
3,870,713 + Psyr_3231 0.45 -0.7
3,870,713 + Psyr_3231 0.45 +0.4
3,870,713 + Psyr_3231 0.45 -1.2
3,870,713 + Psyr_3231 0.45 +1.9
3,870,713 + Psyr_3231 0.45 +0.3
3,870,713 + Psyr_3231 0.45 -0.4
3,870,713 + Psyr_3231 0.45 -0.1
3,870,713 + Psyr_3231 0.45 -0.1
3,870,713 + Psyr_3231 0.45 -0.4
3,870,713 + Psyr_3231 0.45 +1.0
3,870,713 + Psyr_3231 0.45 -0.3
3,870,713 + Psyr_3231 0.45 +1.4
3,870,713 + Psyr_3231 0.45 +0.2
3,870,713 + Psyr_3231 0.45 +0.6
3,870,713 + Psyr_3231 0.45 +0.6
3,870,713 + Psyr_3231 0.45 -0.0
3,870,713 + Psyr_3231 0.45 +0.6
3,870,713 + Psyr_3231 0.45 -1.0
3,870,713 + Psyr_3231 0.45 -0.0
3,870,714 - Psyr_3231 0.45 +0.4
3,870,714 - Psyr_3231 0.45 +1.8
3,870,714 - Psyr_3231 0.45 -1.8
3,870,714 - Psyr_3231 0.45 -0.9
3,870,714 - Psyr_3231 0.45 -1.0
3,870,714 - Psyr_3231 0.45 -2.2
3,870,714 - Psyr_3231 0.45 +0.2
3,870,714 - Psyr_3231 0.45 -0.8
3,870,714 - Psyr_3231 0.45 +1.6
3,870,714 - Psyr_3231 0.45 -2.0
3,870,714 - Psyr_3231 0.45 +1.8
3,870,714 - Psyr_3231 0.45 +0.9
3,870,714 - Psyr_3231 0.45 +1.4
3,870,714 - Psyr_3231 0.45 +0.1
3,870,714 - Psyr_3231 0.45 +0.6
3,870,714 - Psyr_3231 0.45 -2.0
3,870,714 - Psyr_3231 0.45 -0.9
3,870,714 - Psyr_3231 0.45 +0.3
3,870,714 - Psyr_3231 0.45 -1.0
3,870,714 - Psyr_3231 0.45 +0.3
3,870,714 - Psyr_3231 0.45 -0.1
3,870,714 - Psyr_3231 0.45 -1.0
3,870,714 - Psyr_3231 0.45 +0.6
3,870,714 - Psyr_3231 0.45 +1.3
3,870,714 - Psyr_3231 0.45 +1.2
3,870,714 - Psyr_3231 0.45 -0.4
3,870,715 + Psyr_3231 0.45 +0.8
3,870,716 - Psyr_3231 0.46 +0.6

Or see this region's nucleotide sequence