Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3062 and Psyr_3063 are separated by 158 nucleotides Psyr_3063 and Psyr_3064 overlap by 4 nucleotides
Psyr_3062: Psyr_3062 - transcriptional regulator, LysR family, at 3,661,504 to 3,662,400
_3062
Psyr_3063: Psyr_3063 - Major facilitator superfamily, at 3,662,559 to 3,664,124
_3063
Psyr_3064: Psyr_3064 - luciferase, at 3,664,121 to 3,665,098
_3064
Position (kb)
3662
3663
3664
3665 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3661.622 kb on + strand, within Psyr_3062 at 3661.623 kb on - strand, within Psyr_3062 at 3661.623 kb on - strand, within Psyr_3062 at 3661.740 kb on + strand, within Psyr_3062 at 3661.740 kb on + strand, within Psyr_3062 at 3661.740 kb on + strand, within Psyr_3062 at 3661.741 kb on - strand, within Psyr_3062 at 3661.741 kb on - strand, within Psyr_3062 at 3661.760 kb on - strand, within Psyr_3062 at 3661.877 kb on - strand, within Psyr_3062 at 3661.896 kb on - strand, within Psyr_3062 at 3662.058 kb on + strand, within Psyr_3062 at 3662.059 kb on - strand, within Psyr_3062 at 3662.059 kb on - strand, within Psyr_3062 at 3662.292 kb on + strand, within Psyr_3062 at 3662.292 kb on + strand, within Psyr_3062 at 3662.293 kb on - strand, within Psyr_3062 at 3662.293 kb on - strand, within Psyr_3062 at 3662.343 kb on + strand at 3662.431 kb on + strand at 3662.431 kb on + strand at 3662.431 kb on + strand at 3662.432 kb on - strand at 3662.433 kb on + strand at 3662.433 kb on + strand at 3662.433 kb on + strand at 3662.433 kb on + strand at 3662.434 kb on - strand at 3662.434 kb on - strand at 3662.434 kb on - strand at 3662.434 kb on - strand at 3662.434 kb on - strand at 3662.446 kb on + strand at 3662.446 kb on + strand at 3662.446 kb on + strand at 3662.446 kb on + strand at 3662.446 kb on + strand at 3662.446 kb on + strand at 3662.446 kb on + strand at 3662.447 kb on - strand at 3662.447 kb on - strand at 3662.678 kb on - strand at 3662.678 kb on - strand at 3662.739 kb on + strand, within Psyr_3063 at 3662.740 kb on - strand, within Psyr_3063 at 3662.751 kb on + strand, within Psyr_3063 at 3662.789 kb on + strand at 3662.793 kb on + strand, within Psyr_3063 at 3662.793 kb on + strand, within Psyr_3063 at 3662.793 kb on + strand, within Psyr_3063 at 3662.794 kb on - strand, within Psyr_3063 at 3662.794 kb on - strand, within Psyr_3063 at 3662.794 kb on - strand, within Psyr_3063 at 3662.794 kb on - strand, within Psyr_3063 at 3663.013 kb on + strand, within Psyr_3063 at 3663.013 kb on + strand, within Psyr_3063 at 3663.014 kb on - strand, within Psyr_3063 at 3663.014 kb on - strand, within Psyr_3063 at 3663.014 kb on - strand, within Psyr_3063 at 3663.014 kb on - strand, within Psyr_3063 at 3663.014 kb on - strand, within Psyr_3063 at 3663.014 kb on - strand, within Psyr_3063 at 3663.164 kb on + strand, within Psyr_3063 at 3663.216 kb on + strand, within Psyr_3063 at 3663.216 kb on + strand, within Psyr_3063 at 3663.216 kb on + strand, within Psyr_3063 at 3663.216 kb on + strand, within Psyr_3063 at 3663.216 kb on + strand, within Psyr_3063 at 3663.216 kb on + strand, within Psyr_3063 at 3663.217 kb on - strand, within Psyr_3063 at 3663.217 kb on - strand, within Psyr_3063 at 3663.217 kb on - strand, within Psyr_3063 at 3663.217 kb on - strand, within Psyr_3063 at 3663.607 kb on + strand, within Psyr_3063 at 3663.608 kb on - strand, within Psyr_3063 at 3663.969 kb on + strand at 3663.969 kb on + strand at 3663.970 kb on - strand at 3663.970 kb on - strand at 3663.970 kb on - strand at 3664.081 kb on + strand at 3664.137 kb on + strand at 3664.138 kb on - strand at 3664.383 kb on + strand, within Psyr_3064 at 3664.383 kb on + strand, within Psyr_3064 at 3664.431 kb on + strand, within Psyr_3064 at 3664.431 kb on + strand, within Psyr_3064 at 3664.431 kb on + strand, within Psyr_3064 at 3664.431 kb on + strand, within Psyr_3064 at 3664.681 kb on - strand, within Psyr_3064 at 3664.681 kb on - strand, within Psyr_3064 at 3665.038 kb on - strand at 3665.054 kb on + strand at 3665.054 kb on + strand at 3665.054 kb on + strand at 3665.054 kb on + strand at 3665.054 kb on + strand at 3665.054 kb on + strand at 3665.054 kb on + strand at 3665.054 kb on + strand at 3665.054 kb on + strand at 3665.054 kb on + strand at 3665.055 kb on - strand at 3665.104 kb on + strand at 3665.104 kb on + strand at 3665.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 3,661,622 + Psyr_3062 0.13 +0.3 3,661,623 - Psyr_3062 0.13 -0.1 3,661,623 - Psyr_3062 0.13 +0.2 3,661,740 + Psyr_3062 0.26 -0.0 3,661,740 + Psyr_3062 0.26 -0.7 3,661,740 + Psyr_3062 0.26 -1.7 3,661,741 - Psyr_3062 0.26 +0.6 3,661,741 - Psyr_3062 0.26 -0.9 3,661,760 - Psyr_3062 0.29 +1.6 3,661,877 - Psyr_3062 0.42 +1.6 3,661,896 - Psyr_3062 0.44 -0.9 3,662,058 + Psyr_3062 0.62 -2.2 3,662,059 - Psyr_3062 0.62 -1.7 3,662,059 - Psyr_3062 0.62 +0.5 3,662,292 + Psyr_3062 0.88 +0.7 3,662,292 + Psyr_3062 0.88 +2.0 3,662,293 - Psyr_3062 0.88 +0.7 3,662,293 - Psyr_3062 0.88 +0.9 3,662,343 + +0.1 3,662,431 + +0.2 3,662,431 + +0.2 3,662,431 + -1.2 3,662,432 - +0.3 3,662,433 + -1.0 3,662,433 + -2.2 3,662,433 + +0.6 3,662,433 + -1.1 3,662,434 - +0.6 3,662,434 - -0.9 3,662,434 - -0.2 3,662,434 - +0.8 3,662,434 - -0.4 3,662,446 + -0.0 3,662,446 + -1.3 3,662,446 + -0.1 3,662,446 + -0.1 3,662,446 + +0.8 3,662,446 + -1.2 3,662,446 + +0.3 3,662,447 - +0.6 3,662,447 - -0.5 3,662,678 - +1.0 3,662,678 - +0.3 3,662,739 + Psyr_3063 0.11 +0.9 3,662,740 - Psyr_3063 0.12 +1.3 3,662,751 + Psyr_3063 0.12 -2.0 3,662,789 + +0.6 3,662,793 + Psyr_3063 0.15 -0.3 3,662,793 + Psyr_3063 0.15 -1.2 3,662,793 + Psyr_3063 0.15 -0.4 3,662,794 - Psyr_3063 0.15 +0.9 3,662,794 - Psyr_3063 0.15 -0.4 3,662,794 - Psyr_3063 0.15 +1.0 3,662,794 - Psyr_3063 0.15 +0.6 3,663,013 + Psyr_3063 0.29 +1.4 3,663,013 + Psyr_3063 0.29 +1.6 3,663,014 - Psyr_3063 0.29 +0.6 3,663,014 - Psyr_3063 0.29 +0.4 3,663,014 - Psyr_3063 0.29 +0.3 3,663,014 - Psyr_3063 0.29 -0.1 3,663,014 - Psyr_3063 0.29 -0.9 3,663,014 - Psyr_3063 0.29 +0.6 3,663,164 + Psyr_3063 0.39 -2.2 3,663,216 + Psyr_3063 0.42 +1.9 3,663,216 + Psyr_3063 0.42 +0.6 3,663,216 + Psyr_3063 0.42 +1.3 3,663,216 + Psyr_3063 0.42 +3.6 3,663,216 + Psyr_3063 0.42 +0.6 3,663,216 + Psyr_3063 0.42 +1.4 3,663,217 - Psyr_3063 0.42 +0.3 3,663,217 - Psyr_3063 0.42 -0.2 3,663,217 - Psyr_3063 0.42 +1.8 3,663,217 - Psyr_3063 0.42 -0.4 3,663,607 + Psyr_3063 0.67 +0.7 3,663,608 - Psyr_3063 0.67 +0.3 3,663,969 + +0.4 3,663,969 + -0.1 3,663,970 - +0.4 3,663,970 - +0.8 3,663,970 - +0.4 3,664,081 + -1.1 3,664,137 + +0.5 3,664,138 - +0.6 3,664,383 + Psyr_3064 0.27 -0.9 3,664,383 + Psyr_3064 0.27 +0.0 3,664,431 + Psyr_3064 0.32 -1.9 3,664,431 + Psyr_3064 0.32 +0.3 3,664,431 + Psyr_3064 0.32 +3.4 3,664,431 + Psyr_3064 0.32 +0.1 3,664,681 - Psyr_3064 0.57 +0.1 3,664,681 - Psyr_3064 0.57 -0.4 3,665,038 - +0.7 3,665,054 + +0.6 3,665,054 + +0.3 3,665,054 + +2.6 3,665,054 + -0.1 3,665,054 + +0.7 3,665,054 + -0.3 3,665,054 + +0.1 3,665,054 + -0.2 3,665,054 + -0.4 3,665,054 + -0.6 3,665,055 - +0.9 3,665,104 + +0.6 3,665,104 + -1.1 3,665,105 - -1.0
Or see this region's nucleotide sequence