Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3018 and Psyr_3019 overlap by 23 nucleotides Psyr_3019 and Psyr_3020 are separated by 32 nucleotides Psyr_3020 and Psyr_3021 are separated by 84 nucleotides
Psyr_3018: Psyr_3018 - membrane protein, putative, at 3,614,279 to 3,615,001
_3018
Psyr_3019: Psyr_3019 - Cobalamin (vitamin B12) biosynthesis CbiG protein, at 3,614,979 to 3,615,428
_3019
Psyr_3020: Psyr_3020 - precorrin-4 C11-methyltransferase, at 3,615,461 to 3,616,210
_3020
Psyr_3021: Psyr_3021 - Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase, at 3,616,295 to 3,619,777
_3021
Position (kb)
3615
3616
3617 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3614.567 kb on + strand at 3614.568 kb on - strand, within Psyr_3018 at 3614.568 kb on - strand, within Psyr_3018 at 3614.709 kb on + strand, within Psyr_3018 at 3614.709 kb on + strand, within Psyr_3018 at 3614.709 kb on + strand, within Psyr_3018 at 3614.710 kb on - strand, within Psyr_3018 at 3615.470 kb on + strand at 3615.471 kb on - strand at 3615.471 kb on - strand at 3615.471 kb on - strand at 3615.550 kb on + strand, within Psyr_3020 at 3615.554 kb on + strand, within Psyr_3020 at 3615.869 kb on + strand, within Psyr_3020 at 3616.311 kb on + strand at 3616.312 kb on - strand at 3616.312 kb on - strand at 3616.312 kb on - strand at 3616.312 kb on - strand at 3616.312 kb on - strand at 3616.312 kb on - strand at 3616.312 kb on - strand at 3616.404 kb on + strand at 3616.404 kb on + strand at 3616.405 kb on - strand at 3616.506 kb on + strand at 3616.507 kb on - strand at 3616.507 kb on - strand at 3616.507 kb on - strand at 3616.759 kb on - strand, within Psyr_3021 at 3616.776 kb on + strand, within Psyr_3021 at 3616.788 kb on + strand, within Psyr_3021 at 3616.788 kb on + strand, within Psyr_3021 at 3616.789 kb on - strand, within Psyr_3021 at 3616.789 kb on - strand, within Psyr_3021 at 3616.806 kb on + strand, within Psyr_3021 at 3616.807 kb on - strand, within Psyr_3021 at 3616.807 kb on - strand, within Psyr_3021 at 3616.807 kb on - strand, within Psyr_3021 at 3616.924 kb on - strand, within Psyr_3021 at 3616.945 kb on + strand, within Psyr_3021 at 3617.042 kb on - strand, within Psyr_3021
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 3,614,567 + -0.0 3,614,568 - Psyr_3018 0.40 +0.8 3,614,568 - Psyr_3018 0.40 -0.0 3,614,709 + Psyr_3018 0.59 +0.6 3,614,709 + Psyr_3018 0.59 -0.1 3,614,709 + Psyr_3018 0.59 +0.6 3,614,710 - Psyr_3018 0.60 +0.3 3,615,470 + +3.3 3,615,471 - -0.4 3,615,471 - -0.6 3,615,471 - -0.6 3,615,550 + Psyr_3020 0.12 -0.4 3,615,554 + Psyr_3020 0.12 -0.0 3,615,869 + Psyr_3020 0.54 -1.0 3,616,311 + +3.4 3,616,312 - -0.1 3,616,312 - +0.2 3,616,312 - -0.0 3,616,312 - +0.6 3,616,312 - -0.6 3,616,312 - -0.4 3,616,312 - +0.5 3,616,404 + +0.6 3,616,404 + -0.8 3,616,405 - +0.9 3,616,506 + -1.2 3,616,507 - +1.2 3,616,507 - -0.4 3,616,507 - -1.0 3,616,759 - Psyr_3021 0.13 +0.1 3,616,776 + Psyr_3021 0.14 +0.7 3,616,788 + Psyr_3021 0.14 -0.2 3,616,788 + Psyr_3021 0.14 +0.2 3,616,789 - Psyr_3021 0.14 -0.3 3,616,789 - Psyr_3021 0.14 -2.0 3,616,806 + Psyr_3021 0.15 +2.6 3,616,807 - Psyr_3021 0.15 -0.4 3,616,807 - Psyr_3021 0.15 +0.3 3,616,807 - Psyr_3021 0.15 +2.2 3,616,924 - Psyr_3021 0.18 +1.0 3,616,945 + Psyr_3021 0.19 -1.4 3,617,042 - Psyr_3021 0.21 -0.2
Or see this region's nucleotide sequence