Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2801

Experiment: KB with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Dimethyl Sulfoxide 1 vol%
3,380,713	-		Psyr_2798	0.70	+0.3
3,380,713	-		Psyr_2798	0.70	+0.6
3,380,713	-		Psyr_2798	0.70	-2.2
3,380,776	+		Psyr_2798	0.84	+0.1
3,380,777	-		Psyr_2798	0.84	+0.9
3,380,777	-		Psyr_2798	0.84	-1.1
3,380,812	+				+1.3
3,380,833	+				+0.6
3,380,834	-				-1.4
3,380,834	-				+0.3
3,380,873	-				+1.2
3,380,890	+				-0.4
3,380,937	+				+0.2
3,380,950	-				+1.2
3,380,966	-				-1.5
3,380,975	+				+2.2
3,380,975	+				-1.4
3,380,975	+				+0.6
3,380,975	+				-1.7
3,380,975	+				-0.2
3,380,975	+				+0.2
3,380,975	+				+1.3
3,380,976	-				-0.2
3,380,976	-				-1.0
3,380,976	-				+0.8
3,380,979	+				+0.9
3,380,979	+				+0.8
3,380,979	+				+0.4
3,380,980	-				+0.6
3,380,980	-				+0.6
3,381,043	+		Psyr_2799	0.23	-0.8
3,381,043	+		Psyr_2799	0.23	+0.2
3,381,043	+		Psyr_2799	0.23	-2.4
3,381,043	+		Psyr_2799	0.23	-0.7
3,381,043	+		Psyr_2799	0.23	-0.1
3,381,044	-		Psyr_2799	0.24	-1.6
3,381,044	-		Psyr_2799	0.24	+0.9
3,381,044	-		Psyr_2799	0.24	+1.0
3,381,044	-		Psyr_2799	0.24	+0.4
3,381,044	-		Psyr_2799	0.24	-2.5
3,381,044	-		Psyr_2799	0.24	-0.8
3,381,044	-		Psyr_2799	0.24	-2.5
3,381,121	+		Psyr_2799	0.52	-0.2
3,381,179	-		Psyr_2799	0.74	-1.4
3,381,219	-		Psyr_2799	0.89	+0.0
3,381,251	+				+0.6
3,381,251	+				-0.1
3,381,252	-				-0.2
3,381,252	-				-0.6
3,381,252	-				+1.7
3,381,276	-				+1.9
3,381,290	-				+1.4
3,381,292	-				-0.1
3,381,689	+				+0.0
3,381,690	-				+0.5
3,381,690	-				-0.4
3,381,690	-				+1.3
3,381,698	+				-0.6
3,381,698	+				-0.2
3,381,698	+				-2.2
3,381,698	+				-1.5
3,381,698	+				+0.5
3,381,699	-				+1.0
3,381,699	-				-0.0
3,381,699	-				+0.9
3,381,732	-				-0.4
3,381,832	+		Psyr_2801	0.29	-0.0
3,381,832	+		Psyr_2801	0.29	+0.3
3,381,833	-		Psyr_2801	0.30	-1.0
3,381,833	-		Psyr_2801	0.30	+1.0
3,381,841	+		Psyr_2801	0.31	+1.5
3,381,842	-		Psyr_2801	0.32	+0.6
3,381,843	+		Psyr_2801	0.32	+2.0
3,381,843	+		Psyr_2801	0.32	+0.7
3,381,843	+		Psyr_2801	0.32	-0.4
3,381,844	-		Psyr_2801	0.32	-0.0
3,381,844	-		Psyr_2801	0.32	+1.8
3,381,844	-		Psyr_2801	0.32	-1.2
3,381,844	-		Psyr_2801	0.32	+0.3
3,381,873	+		Psyr_2801	0.38	+0.6
3,381,922	-		Psyr_2801	0.49	+0.6
3,382,035	+		Psyr_2801	0.74	-0.1
3,382,035	+		Psyr_2801	0.74	+0.2
3,382,035	+		Psyr_2801	0.74	-0.2
3,382,035	+		Psyr_2801	0.74	-1.9
3,382,035	+		Psyr_2801	0.74	+0.7
3,382,036	-		Psyr_2801	0.75	-2.1
3,382,101	+		Psyr_2801	0.89	-0.4
3,382,101	+		Psyr_2801	0.89	+1.2
3,382,102	-				+0.6
3,382,107	+				+0.4
3,382,107	+				+0.6
3,382,107	+				-1.0
3,382,107	+				+0.0
3,382,108	-				-1.5
3,382,130	+				-0.4
3,382,130	+				-0.4
3,382,131	-				-0.3
3,382,147	+				+1.2
3,382,147	+				+0.6
3,382,147	+				+0.9
3,382,147	+				+2.1
3,382,147	+				+1.0
3,382,147	+				+0.2
3,382,147	+				+0.2
3,382,148	-				-1.5
3,382,173	+				+0.0
3,382,174	-				-1.6
3,382,365	+		Psyr_2802	0.53	+0.5
3,382,365	+		Psyr_2802	0.53	+0.7
3,382,366	-		Psyr_2802	0.53	-0.1
3,382,388	-		Psyr_2802	0.60	-0.0
3,382,388	-		Psyr_2802	0.60	-1.4
3,382,473	+		Psyr_2802	0.85	-0.2
3,382,474	-		Psyr_2802	0.85	-1.1
3,382,508	+				-0.2
3,382,509	-				+1.2
3,382,509	-				-1.3
3,382,861	+				+0.2
3,382,861	+				-0.4
3,382,910	-				+0.6
3,382,951	+				-0.4
3,382,951	+				-0.4
3,382,951	+				-0.4
3,382,952	-				-0.3
3,382,955	+				+1.6
3,382,989	+				-0.3
3,382,990	-				-3.4
3,382,990	-				-0.6
3,382,990	-				-0.7
3,383,012	+				+0.2
3,383,041	+				+1.0
3,383,041	+				-0.1
3,383,042	-				-0.4
3,383,042	-				+0.2
3,383,128	+		Psyr_2804	0.18	-0.2