Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2764

Experiment: KB with Dimethyl Sulfoxide 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2762 and Psyr_2763 are separated by 121 nucleotidesPsyr_2763 and Psyr_2764 are separated by 28 nucleotidesPsyr_2764 and Psyr_2765 overlap by 4 nucleotidesPsyr_2765 and Psyr_2766 are separated by 12 nucleotidesPsyr_2766 and Psyr_2767 overlap by 4 nucleotides Psyr_2762: Psyr_2762 - Peptidase S24, S26A and S26B, at 3,349,989 to 3,350,420 _2762 Psyr_2763: Psyr_2763 - Protein of unknown function DUF159, at 3,350,542 to 3,351,231 _2763 Psyr_2764: Psyr_2764 - conserved hypothetical protein, at 3,351,260 to 3,352,504 _2764 Psyr_2765: Psyr_2765 - conserved domain protein, at 3,352,501 to 3,352,713 _2765 Psyr_2766: Psyr_2766 - conserved hypothetical protein, at 3,352,726 to 3,353,253 _2766 Psyr_2767: Psyr_2767 - Glycoside hydrolase, family 19, at 3,353,250 to 3,353,783 _2767 Position (kb) 3351 3352 3353Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3350.263 kb on + strand, within Psyr_2762at 3350.304 kb on + strand, within Psyr_2762at 3350.304 kb on + strand, within Psyr_2762at 3350.304 kb on + strand, within Psyr_2762at 3350.305 kb on - strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.353 kb on - strand, within Psyr_2762at 3350.407 kb on + strandat 3350.407 kb on + strandat 3350.408 kb on - strandat 3350.581 kb on + strandat 3350.581 kb on + strandat 3350.585 kb on + strandat 3350.585 kb on + strandat 3350.586 kb on - strandat 3350.647 kb on + strand, within Psyr_2763at 3350.648 kb on - strand, within Psyr_2763at 3350.648 kb on - strand, within Psyr_2763at 3350.648 kb on - strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.903 kb on - strand, within Psyr_2763at 3350.903 kb on - strand, within Psyr_2763at 3350.903 kb on - strand, within Psyr_2763at 3351.000 kb on + strand, within Psyr_2763at 3351.001 kb on - strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.036 kb on - strand, within Psyr_2763at 3351.036 kb on - strand, within Psyr_2763at 3351.122 kb on + strand, within Psyr_2763at 3351.122 kb on + strand, within Psyr_2763at 3351.123 kb on - strand, within Psyr_2763at 3351.138 kb on + strand, within Psyr_2763at 3351.139 kb on - strand, within Psyr_2763at 3351.163 kb on + strandat 3351.163 kb on + strandat 3351.164 kb on - strandat 3351.164 kb on - strandat 3351.166 kb on - strandat 3351.166 kb on - strandat 3351.166 kb on - strandat 3351.166 kb on - strandat 3351.216 kb on - strandat 3351.230 kb on - strandat 3351.237 kb on + strandat 3351.327 kb on + strandat 3351.327 kb on + strandat 3351.327 kb on + strandat 3351.329 kb on + strandat 3351.329 kb on + strandat 3351.329 kb on + strandat 3351.330 kb on - strandat 3351.432 kb on + strand, within Psyr_2764at 3351.433 kb on - strand, within Psyr_2764at 3351.433 kb on - strand, within Psyr_2764at 3351.433 kb on - strand, within Psyr_2764at 3351.433 kb on - strand, within Psyr_2764at 3351.453 kb on + strand, within Psyr_2764at 3351.453 kb on + strand, within Psyr_2764at 3351.591 kb on - strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.615 kb on + strand, within Psyr_2764at 3351.616 kb on - strand, within Psyr_2764at 3351.616 kb on - strand, within Psyr_2764at 3351.616 kb on - strand, within Psyr_2764at 3351.616 kb on - strand, within Psyr_2764at 3351.616 kb on - strand, within Psyr_2764at 3351.693 kb on + strand, within Psyr_2764at 3351.694 kb on - strand, within Psyr_2764at 3351.694 kb on - strand, within Psyr_2764at 3352.003 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.054 kb on - strand, within Psyr_2764at 3352.332 kb on + strand, within Psyr_2764at 3352.333 kb on - strand, within Psyr_2764at 3352.539 kb on + strand, within Psyr_2765at 3352.685 kb on + strand, within Psyr_2765at 3352.685 kb on + strand, within Psyr_2765at 3352.685 kb on + strand, within Psyr_2765at 3352.686 kb on - strand, within Psyr_2765at 3352.686 kb on - strand, within Psyr_2765at 3352.704 kb on + strandat 3352.716 kb on + strandat 3352.717 kb on - strandat 3352.738 kb on - strandat 3352.999 kb on - strand, within Psyr_2766at 3352.999 kb on - strand, within Psyr_2766at 3353.186 kb on + strand, within Psyr_2766at 3353.278 kb on + strandat 3353.480 kb on - strand, within Psyr_2767

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol%
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3,350,263 + Psyr_2762 0.63 +0.4
3,350,304 + Psyr_2762 0.73 +0.6
3,350,304 + Psyr_2762 0.73 +1.2
3,350,304 + Psyr_2762 0.73 +0.5
3,350,305 - Psyr_2762 0.73 -0.5
3,350,306 + Psyr_2762 0.73 -1.8
3,350,306 + Psyr_2762 0.73 +0.3
3,350,306 + Psyr_2762 0.73 +0.2
3,350,306 + Psyr_2762 0.73 +0.1
3,350,306 + Psyr_2762 0.73 -0.2
3,350,306 + Psyr_2762 0.73 -0.4
3,350,306 + Psyr_2762 0.73 +1.1
3,350,306 + Psyr_2762 0.73 -0.1
3,350,306 + Psyr_2762 0.73 +0.1
3,350,306 + Psyr_2762 0.73 -0.5
3,350,306 + Psyr_2762 0.73 +0.9
3,350,306 + Psyr_2762 0.73 -1.0
3,350,306 + Psyr_2762 0.73 +0.9
3,350,306 + Psyr_2762 0.73 -1.2
3,350,307 - Psyr_2762 0.74 -1.4
3,350,307 - Psyr_2762 0.74 +0.4
3,350,307 - Psyr_2762 0.74 -1.7
3,350,307 - Psyr_2762 0.74 -0.1
3,350,307 - Psyr_2762 0.74 +0.2
3,350,307 - Psyr_2762 0.74 -0.2
3,350,307 - Psyr_2762 0.74 +0.9
3,350,307 - Psyr_2762 0.74 -0.4
3,350,307 - Psyr_2762 0.74 +0.4
3,350,307 - Psyr_2762 0.74 +0.7
3,350,307 - Psyr_2762 0.74 -0.4
3,350,307 - Psyr_2762 0.74 -0.2
3,350,307 - Psyr_2762 0.74 +0.2
3,350,307 - Psyr_2762 0.74 +0.1
3,350,307 - Psyr_2762 0.74 -1.4
3,350,307 - Psyr_2762 0.74 -0.2
3,350,307 - Psyr_2762 0.74 +0.0
3,350,353 - Psyr_2762 0.84 +0.1
3,350,407 + +0.9
3,350,407 + +0.9
3,350,408 - +0.4
3,350,581 + +0.3
3,350,581 + -0.4
3,350,585 + -0.1
3,350,585 + +0.2
3,350,586 - +0.6
3,350,647 + Psyr_2763 0.15 -0.1
3,350,648 - Psyr_2763 0.15 +1.3
3,350,648 - Psyr_2763 0.15 +0.1
3,350,648 - Psyr_2763 0.15 -1.2
3,350,902 + Psyr_2763 0.52 +0.8
3,350,902 + Psyr_2763 0.52 -0.0
3,350,902 + Psyr_2763 0.52 -0.2
3,350,902 + Psyr_2763 0.52 +0.5
3,350,902 + Psyr_2763 0.52 -1.5
3,350,903 - Psyr_2763 0.52 -0.9
3,350,903 - Psyr_2763 0.52 +0.0
3,350,903 - Psyr_2763 0.52 -0.2
3,351,000 + Psyr_2763 0.66 -1.0
3,351,001 - Psyr_2763 0.67 -0.7
3,351,035 + Psyr_2763 0.71 +0.3
3,351,035 + Psyr_2763 0.71 +1.3
3,351,035 + Psyr_2763 0.71 +0.9
3,351,035 + Psyr_2763 0.71 -0.5
3,351,036 - Psyr_2763 0.72 -1.0
3,351,036 - Psyr_2763 0.72 -2.2
3,351,122 + Psyr_2763 0.84 -0.4
3,351,122 + Psyr_2763 0.84 +0.0
3,351,123 - Psyr_2763 0.84 +0.5
3,351,138 + Psyr_2763 0.86 -1.0
3,351,139 - Psyr_2763 0.87 +0.6
3,351,163 + -0.3
3,351,163 + -1.7
3,351,164 - +0.2
3,351,164 - +0.6
3,351,166 - +0.0
3,351,166 - +0.9
3,351,166 - +0.4
3,351,166 - -1.4
3,351,216 - -1.3
3,351,230 - +3.2
3,351,237 + -0.6
3,351,327 + +1.3
3,351,327 + -1.1
3,351,327 + +0.3
3,351,329 + -0.7
3,351,329 + +0.6
3,351,329 + -0.1
3,351,330 - +1.6
3,351,432 + Psyr_2764 0.14 -1.5
3,351,433 - Psyr_2764 0.14 -0.1
3,351,433 - Psyr_2764 0.14 +1.2
3,351,433 - Psyr_2764 0.14 -0.8
3,351,433 - Psyr_2764 0.14 +0.0
3,351,453 + Psyr_2764 0.16 +0.6
3,351,453 + Psyr_2764 0.16 +0.7
3,351,591 - Psyr_2764 0.27 -0.2
3,351,615 + Psyr_2764 0.29 +0.0
3,351,615 + Psyr_2764 0.29 +1.6
3,351,615 + Psyr_2764 0.29 +0.4
3,351,615 + Psyr_2764 0.29 +1.2
3,351,615 + Psyr_2764 0.29 +0.3
3,351,615 + Psyr_2764 0.29 -1.3
3,351,615 + Psyr_2764 0.29 +1.1
3,351,615 + Psyr_2764 0.29 +0.2
3,351,615 + Psyr_2764 0.29 +0.6
3,351,615 + Psyr_2764 0.29 +0.9
3,351,616 - Psyr_2764 0.29 +0.6
3,351,616 - Psyr_2764 0.29 +0.2
3,351,616 - Psyr_2764 0.29 +0.6
3,351,616 - Psyr_2764 0.29 -0.0
3,351,616 - Psyr_2764 0.29 +0.2
3,351,693 + Psyr_2764 0.35 -0.5
3,351,694 - Psyr_2764 0.35 +0.1
3,351,694 - Psyr_2764 0.35 +1.6
3,352,003 + Psyr_2764 0.60 +0.6
3,352,032 + Psyr_2764 0.62 -2.7
3,352,032 + Psyr_2764 0.62 +0.5
3,352,032 + Psyr_2764 0.62 +0.8
3,352,032 + Psyr_2764 0.62 +0.6
3,352,032 + Psyr_2764 0.62 -0.7
3,352,032 + Psyr_2764 0.62 +1.1
3,352,032 + Psyr_2764 0.62 -0.2
3,352,033 - Psyr_2764 0.62 +0.6
3,352,033 - Psyr_2764 0.62 +1.0
3,352,033 - Psyr_2764 0.62 +0.2
3,352,033 - Psyr_2764 0.62 +1.5
3,352,033 - Psyr_2764 0.62 +0.2
3,352,033 - Psyr_2764 0.62 +1.6
3,352,033 - Psyr_2764 0.62 -0.8
3,352,054 - Psyr_2764 0.64 +1.2
3,352,332 + Psyr_2764 0.86 +0.2
3,352,333 - Psyr_2764 0.86 +2.2
3,352,539 + Psyr_2765 0.18 -0.7
3,352,685 + Psyr_2765 0.86 -0.8
3,352,685 + Psyr_2765 0.86 +1.6
3,352,685 + Psyr_2765 0.86 +0.5
3,352,686 - Psyr_2765 0.87 -1.6
3,352,686 - Psyr_2765 0.87 +0.3
3,352,704 + -0.2
3,352,716 + -1.4
3,352,717 - -0.1
3,352,738 - -0.5
3,352,999 - Psyr_2766 0.52 +1.3
3,352,999 - Psyr_2766 0.52 +0.0
3,353,186 + Psyr_2766 0.87 +1.6
3,353,278 + -0.7
3,353,480 - Psyr_2767 0.43 +0.8

Or see this region's nucleotide sequence