Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2737

Experiment: KB with Dimethyl Sulfoxide 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2736 and Psyr_2737 are separated by 164 nucleotidesPsyr_2737 and Psyr_2738 are separated by 50 nucleotidesPsyr_2738 and Psyr_2739 are separated by 202 nucleotides Psyr_2736: Psyr_2736 - glycosidase, putative, at 3,321,952 to 3,324,015 _2736 Psyr_2737: Psyr_2737 - hypothetical protein, at 3,324,180 to 3,324,695 _2737 Psyr_2738: Psyr_2738 - regulatory protein, LysR, at 3,324,746 to 3,325,069 _2738 Psyr_2739: Psyr_2739 - ThiJ/PfpI, at 3,325,272 to 3,325,877 _2739 Position (kb) 3324 3325Strain fitness (log2 ratio) -2 -1 0 1 2at 3323.255 kb on + strand, within Psyr_2736at 3323.255 kb on + strand, within Psyr_2736at 3323.256 kb on - strand, within Psyr_2736at 3323.378 kb on + strand, within Psyr_2736at 3323.378 kb on + strand, within Psyr_2736at 3323.378 kb on + strand, within Psyr_2736at 3323.378 kb on + strand, within Psyr_2736at 3323.378 kb on + strand, within Psyr_2736at 3323.378 kb on + strand, within Psyr_2736at 3323.378 kb on + strand, within Psyr_2736at 3323.379 kb on - strand, within Psyr_2736at 3323.379 kb on - strand, within Psyr_2736at 3323.379 kb on - strand, within Psyr_2736at 3323.379 kb on - strand, within Psyr_2736at 3323.514 kb on - strand, within Psyr_2736at 3323.993 kb on + strandat 3323.993 kb on + strandat 3323.994 kb on - strandat 3323.994 kb on - strandat 3324.079 kb on + strandat 3324.079 kb on + strandat 3324.079 kb on + strandat 3324.079 kb on + strandat 3324.079 kb on + strandat 3324.080 kb on - strandat 3324.080 kb on - strandat 3324.080 kb on - strandat 3324.080 kb on - strandat 3324.080 kb on - strandat 3324.080 kb on - strandat 3324.080 kb on - strandat 3324.435 kb on + strand, within Psyr_2737at 3324.496 kb on + strand, within Psyr_2737at 3324.496 kb on + strand, within Psyr_2737at 3324.564 kb on + strand, within Psyr_2737at 3324.565 kb on - strand, within Psyr_2737at 3324.565 kb on - strand, within Psyr_2737at 3324.568 kb on + strand, within Psyr_2737at 3324.569 kb on - strand, within Psyr_2737at 3324.598 kb on + strand, within Psyr_2737at 3324.652 kb on - strandat 3324.835 kb on + strand, within Psyr_2738at 3324.835 kb on + strand, within Psyr_2738at 3324.835 kb on + strand, within Psyr_2738at 3324.835 kb on + strand, within Psyr_2738at 3324.835 kb on + strand, within Psyr_2738at 3324.836 kb on - strand, within Psyr_2738at 3324.836 kb on - strand, within Psyr_2738at 3324.836 kb on - strand, within Psyr_2738at 3324.945 kb on + strand, within Psyr_2738at 3324.946 kb on - strand, within Psyr_2738at 3324.946 kb on - strand, within Psyr_2738at 3324.946 kb on - strand, within Psyr_2738at 3325.110 kb on + strandat 3325.110 kb on + strandat 3325.237 kb on + strandat 3325.237 kb on + strandat 3325.237 kb on + strandat 3325.238 kb on - strandat 3325.238 kb on - strandat 3325.238 kb on - strandat 3325.238 kb on - strandat 3325.313 kb on + strandat 3325.382 kb on + strand, within Psyr_2739at 3325.383 kb on - strand, within Psyr_2739

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol%
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3,323,255 + Psyr_2736 0.63 +1.6
3,323,255 + Psyr_2736 0.63 +1.6
3,323,256 - Psyr_2736 0.63 +0.3
3,323,378 + Psyr_2736 0.69 +0.1
3,323,378 + Psyr_2736 0.69 -2.0
3,323,378 + Psyr_2736 0.69 +1.3
3,323,378 + Psyr_2736 0.69 +0.6
3,323,378 + Psyr_2736 0.69 +0.7
3,323,378 + Psyr_2736 0.69 -0.5
3,323,378 + Psyr_2736 0.69 -0.7
3,323,379 - Psyr_2736 0.69 +0.5
3,323,379 - Psyr_2736 0.69 -0.3
3,323,379 - Psyr_2736 0.69 +1.0
3,323,379 - Psyr_2736 0.69 +0.3
3,323,514 - Psyr_2736 0.76 -0.1
3,323,993 + +1.4
3,323,993 + -0.1
3,323,994 - -1.0
3,323,994 - +2.0
3,324,079 + +0.2
3,324,079 + +0.1
3,324,079 + -0.4
3,324,079 + -1.0
3,324,079 + -0.4
3,324,080 - -1.8
3,324,080 - +1.5
3,324,080 - +1.0
3,324,080 - -1.5
3,324,080 - +0.6
3,324,080 - -0.6
3,324,080 - +0.4
3,324,435 + Psyr_2737 0.49 -0.4
3,324,496 + Psyr_2737 0.61 -1.0
3,324,496 + Psyr_2737 0.61 +1.0
3,324,564 + Psyr_2737 0.74 -0.8
3,324,565 - Psyr_2737 0.75 -1.1
3,324,565 - Psyr_2737 0.75 -2.2
3,324,568 + Psyr_2737 0.75 +0.3
3,324,569 - Psyr_2737 0.75 -1.0
3,324,598 + Psyr_2737 0.81 +0.6
3,324,652 - -0.1
3,324,835 + Psyr_2738 0.27 +0.3
3,324,835 + Psyr_2738 0.27 +0.6
3,324,835 + Psyr_2738 0.27 -2.2
3,324,835 + Psyr_2738 0.27 +0.6
3,324,835 + Psyr_2738 0.27 -0.4
3,324,836 - Psyr_2738 0.28 -1.0
3,324,836 - Psyr_2738 0.28 -1.2
3,324,836 - Psyr_2738 0.28 -1.0
3,324,945 + Psyr_2738 0.61 -0.3
3,324,946 - Psyr_2738 0.62 +0.1
3,324,946 - Psyr_2738 0.62 -0.3
3,324,946 - Psyr_2738 0.62 -1.4
3,325,110 + -0.8
3,325,110 + -2.5
3,325,237 + -0.4
3,325,237 + +1.6
3,325,237 + +0.5
3,325,238 - +0.2
3,325,238 - -0.1
3,325,238 - -0.0
3,325,238 - -1.0
3,325,313 + -0.6
3,325,382 + Psyr_2739 0.18 +0.6
3,325,383 - Psyr_2739 0.18 -0.1

Or see this region's nucleotide sequence