Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2678 and Psyr_2679 are separated by 28 nucleotides Psyr_2679 and Psyr_2680 overlap by 1 nucleotides Psyr_2680 and Psyr_2681 overlap by 23 nucleotides
Psyr_2678: Psyr_2678 - extracellular solute-binding protein, family 5, at 3,249,496 to 3,250,998
_2678
Psyr_2679: Psyr_2679 - Binding-protein-dependent transport systems inner membrane component, at 3,251,027 to 3,251,971
_2679
Psyr_2680: Psyr_2680 - Binding-protein-dependent transport systems inner membrane component, at 3,251,971 to 3,252,843
_2680
Psyr_2681: Psyr_2681 - gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03, at 3,252,821 to 3,254,470
_2681
Position (kb) 3251
3252
3253 Strain fitness (log2 ratio) -1
0
1
2 at 3251.220 kb on - strand, within Psyr_2679 at 3251.646 kb on + strand, within Psyr_2679 at 3251.699 kb on - strand, within Psyr_2679 at 3251.805 kb on + strand, within Psyr_2679 at 3251.805 kb on + strand, within Psyr_2679 at 3251.806 kb on - strand, within Psyr_2679 at 3251.861 kb on + strand, within Psyr_2679 at 3252.063 kb on - strand, within Psyr_2680 at 3252.181 kb on + strand, within Psyr_2680 at 3252.182 kb on - strand, within Psyr_2680 at 3252.182 kb on - strand, within Psyr_2680 at 3252.233 kb on - strand, within Psyr_2680 at 3252.319 kb on + strand, within Psyr_2680 at 3252.575 kb on - strand, within Psyr_2680 at 3252.575 kb on - strand, within Psyr_2680 at 3252.715 kb on - strand, within Psyr_2680 at 3252.775 kb on + strand at 3252.775 kb on + strand at 3252.775 kb on + strand at 3252.775 kb on + strand at 3252.775 kb on + strand at 3252.776 kb on - strand at 3252.776 kb on - strand at 3252.874 kb on + strand at 3252.874 kb on + strand at 3252.875 kb on - strand at 3252.875 kb on - strand at 3252.894 kb on - strand at 3252.894 kb on - strand at 3253.500 kb on - strand, within Psyr_2681 at 3253.617 kb on - strand, within Psyr_2681
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 3,251,220 - Psyr_2679 0.20 +1.0 3,251,646 + Psyr_2679 0.66 -0.4 3,251,699 - Psyr_2679 0.71 +0.3 3,251,805 + Psyr_2679 0.82 -0.1 3,251,805 + Psyr_2679 0.82 +0.4 3,251,806 - Psyr_2679 0.82 +0.6 3,251,861 + Psyr_2679 0.88 -0.7 3,252,063 - Psyr_2680 0.11 -1.2 3,252,181 + Psyr_2680 0.24 +1.9 3,252,182 - Psyr_2680 0.24 -0.5 3,252,182 - Psyr_2680 0.24 +0.6 3,252,233 - Psyr_2680 0.30 -0.4 3,252,319 + Psyr_2680 0.40 +0.2 3,252,575 - Psyr_2680 0.69 +1.6 3,252,575 - Psyr_2680 0.69 +1.6 3,252,715 - Psyr_2680 0.85 +1.0 3,252,775 + +0.9 3,252,775 + -0.7 3,252,775 + +0.3 3,252,775 + -1.0 3,252,775 + -1.4 3,252,776 - +0.2 3,252,776 - +0.4 3,252,874 + -0.6 3,252,874 + +0.2 3,252,875 - -1.5 3,252,875 - +0.9 3,252,894 - -0.7 3,252,894 - +1.2 3,253,500 - Psyr_2681 0.41 +0.4 3,253,617 - Psyr_2681 0.48 +0.8
Or see this region's nucleotide sequence