Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2490 and Psyr_2491 overlap by 4 nucleotides Psyr_2491 and Psyr_2492 are separated by 30 nucleotides
Psyr_2490: Psyr_2490 - trehalose synthase, at 2,894,342 to 2,897,668
_2490
Psyr_2491: Psyr_2491 - glycogen branching enzyme, at 2,897,665 to 2,899,890
_2491
Psyr_2492: Psyr_2492 - Outer membrane autotransporter barrel, at 2,899,921 to 2,902,665
_2492
Position (kb)
2897
2898
2899
2900 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2896.883 kb on + strand, within Psyr_2490 at 2896.883 kb on + strand, within Psyr_2490 at 2896.883 kb on + strand, within Psyr_2490 at 2896.883 kb on + strand, within Psyr_2490 at 2896.884 kb on - strand, within Psyr_2490 at 2896.884 kb on - strand, within Psyr_2490 at 2896.884 kb on - strand, within Psyr_2490 at 2897.226 kb on + strand, within Psyr_2490 at 2897.227 kb on - strand, within Psyr_2490 at 2897.227 kb on - strand, within Psyr_2490 at 2897.227 kb on - strand, within Psyr_2490 at 2897.438 kb on + strand at 2897.439 kb on - strand at 2897.439 kb on - strand at 2897.579 kb on + strand at 2897.580 kb on - strand at 2897.800 kb on + strand at 2897.800 kb on + strand at 2897.801 kb on - strand at 2897.932 kb on + strand, within Psyr_2491 at 2897.984 kb on - strand, within Psyr_2491 at 2898.250 kb on + strand, within Psyr_2491 at 2898.250 kb on + strand, within Psyr_2491 at 2898.250 kb on + strand, within Psyr_2491 at 2898.250 kb on + strand, within Psyr_2491 at 2898.251 kb on - strand, within Psyr_2491 at 2898.251 kb on - strand, within Psyr_2491 at 2898.252 kb on + strand, within Psyr_2491 at 2898.252 kb on + strand, within Psyr_2491 at 2898.252 kb on + strand, within Psyr_2491 at 2898.252 kb on + strand, within Psyr_2491 at 2898.252 kb on + strand, within Psyr_2491 at 2898.252 kb on + strand, within Psyr_2491 at 2898.252 kb on + strand, within Psyr_2491 at 2898.253 kb on - strand, within Psyr_2491 at 2898.253 kb on - strand, within Psyr_2491 at 2898.253 kb on - strand, within Psyr_2491 at 2898.253 kb on - strand, within Psyr_2491 at 2898.496 kb on + strand, within Psyr_2491 at 2898.497 kb on - strand, within Psyr_2491 at 2898.497 kb on - strand, within Psyr_2491 at 2898.532 kb on + strand, within Psyr_2491 at 2898.532 kb on + strand, within Psyr_2491 at 2898.614 kb on + strand, within Psyr_2491 at 2898.832 kb on + strand, within Psyr_2491 at 2898.832 kb on + strand, within Psyr_2491 at 2898.832 kb on + strand, within Psyr_2491 at 2898.832 kb on + strand, within Psyr_2491 at 2898.832 kb on + strand, within Psyr_2491 at 2898.833 kb on - strand, within Psyr_2491 at 2898.833 kb on - strand, within Psyr_2491 at 2898.833 kb on - strand, within Psyr_2491 at 2898.833 kb on - strand, within Psyr_2491 at 2899.144 kb on + strand, within Psyr_2491 at 2899.144 kb on + strand, within Psyr_2491 at 2899.145 kb on - strand, within Psyr_2491 at 2899.145 kb on - strand, within Psyr_2491 at 2899.145 kb on - strand, within Psyr_2491 at 2899.145 kb on - strand, within Psyr_2491 at 2899.184 kb on - strand, within Psyr_2491 at 2899.184 kb on - strand, within Psyr_2491 at 2899.184 kb on - strand, within Psyr_2491 at 2899.246 kb on + strand, within Psyr_2491 at 2899.246 kb on + strand, within Psyr_2491 at 2899.247 kb on - strand, within Psyr_2491 at 2899.247 kb on - strand, within Psyr_2491 at 2899.247 kb on - strand, within Psyr_2491 at 2899.247 kb on - strand, within Psyr_2491 at 2899.269 kb on - strand, within Psyr_2491 at 2899.275 kb on + strand, within Psyr_2491 at 2899.275 kb on + strand, within Psyr_2491 at 2899.276 kb on - strand, within Psyr_2491 at 2899.276 kb on - strand, within Psyr_2491 at 2899.367 kb on - strand, within Psyr_2491 at 2899.367 kb on - strand, within Psyr_2491 at 2899.469 kb on - strand, within Psyr_2491 at 2899.697 kb on - strand at 2899.992 kb on - strand at 2900.083 kb on + strand at 2900.084 kb on - strand at 2900.154 kb on - strand at 2900.183 kb on + strand at 2900.183 kb on + strand at 2900.184 kb on - strand at 2900.222 kb on + strand, within Psyr_2492 at 2900.222 kb on + strand, within Psyr_2492 at 2900.222 kb on + strand, within Psyr_2492 at 2900.453 kb on + strand, within Psyr_2492 at 2900.454 kb on - strand, within Psyr_2492 at 2900.514 kb on + strand, within Psyr_2492 at 2900.514 kb on + strand, within Psyr_2492 at 2900.634 kb on - strand, within Psyr_2492 at 2900.634 kb on - strand, within Psyr_2492 at 2900.634 kb on - strand, within Psyr_2492 at 2900.849 kb on + strand, within Psyr_2492 at 2900.849 kb on + strand, within Psyr_2492 at 2900.850 kb on - strand, within Psyr_2492
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 2,896,883 + Psyr_2490 0.76 -0.4 2,896,883 + Psyr_2490 0.76 -0.4 2,896,883 + Psyr_2490 0.76 +0.3 2,896,883 + Psyr_2490 0.76 -1.0 2,896,884 - Psyr_2490 0.76 +0.6 2,896,884 - Psyr_2490 0.76 -0.8 2,896,884 - Psyr_2490 0.76 +0.5 2,897,226 + Psyr_2490 0.87 +1.0 2,897,227 - Psyr_2490 0.87 -0.0 2,897,227 - Psyr_2490 0.87 +0.6 2,897,227 - Psyr_2490 0.87 +2.0 2,897,438 + +0.4 2,897,439 - -0.7 2,897,439 - +0.7 2,897,579 + +0.8 2,897,580 - -0.4 2,897,800 + -0.4 2,897,800 + +1.1 2,897,801 - -0.0 2,897,932 + Psyr_2491 0.12 -0.9 2,897,984 - Psyr_2491 0.14 -1.0 2,898,250 + Psyr_2491 0.26 +1.6 2,898,250 + Psyr_2491 0.26 +1.2 2,898,250 + Psyr_2491 0.26 +0.0 2,898,250 + Psyr_2491 0.26 +0.2 2,898,251 - Psyr_2491 0.26 -1.3 2,898,251 - Psyr_2491 0.26 -0.4 2,898,252 + Psyr_2491 0.26 -0.7 2,898,252 + Psyr_2491 0.26 +1.6 2,898,252 + Psyr_2491 0.26 -0.1 2,898,252 + Psyr_2491 0.26 -2.2 2,898,252 + Psyr_2491 0.26 -0.2 2,898,252 + Psyr_2491 0.26 -1.4 2,898,252 + Psyr_2491 0.26 +0.6 2,898,253 - Psyr_2491 0.26 -0.2 2,898,253 - Psyr_2491 0.26 +0.0 2,898,253 - Psyr_2491 0.26 +1.1 2,898,253 - Psyr_2491 0.26 -0.5 2,898,496 + Psyr_2491 0.37 -0.4 2,898,497 - Psyr_2491 0.37 -0.2 2,898,497 - Psyr_2491 0.37 +0.2 2,898,532 + Psyr_2491 0.39 +0.1 2,898,532 + Psyr_2491 0.39 +0.6 2,898,614 + Psyr_2491 0.43 +0.2 2,898,832 + Psyr_2491 0.52 -1.8 2,898,832 + Psyr_2491 0.52 +0.6 2,898,832 + Psyr_2491 0.52 +1.9 2,898,832 + Psyr_2491 0.52 +0.6 2,898,832 + Psyr_2491 0.52 -0.7 2,898,833 - Psyr_2491 0.52 -0.6 2,898,833 - Psyr_2491 0.52 +1.6 2,898,833 - Psyr_2491 0.52 +0.9 2,898,833 - Psyr_2491 0.52 -0.8 2,899,144 + Psyr_2491 0.66 +1.0 2,899,144 + Psyr_2491 0.66 -1.8 2,899,145 - Psyr_2491 0.66 +0.1 2,899,145 - Psyr_2491 0.66 +0.2 2,899,145 - Psyr_2491 0.66 +0.9 2,899,145 - Psyr_2491 0.66 -1.4 2,899,184 - Psyr_2491 0.68 -2.0 2,899,184 - Psyr_2491 0.68 +0.6 2,899,184 - Psyr_2491 0.68 -0.9 2,899,246 + Psyr_2491 0.71 +0.3 2,899,246 + Psyr_2491 0.71 -0.1 2,899,247 - Psyr_2491 0.71 -1.3 2,899,247 - Psyr_2491 0.71 -0.7 2,899,247 - Psyr_2491 0.71 -0.7 2,899,247 - Psyr_2491 0.71 -0.5 2,899,269 - Psyr_2491 0.72 -0.8 2,899,275 + Psyr_2491 0.72 -0.0 2,899,275 + Psyr_2491 0.72 +0.6 2,899,276 - Psyr_2491 0.72 -1.4 2,899,276 - Psyr_2491 0.72 -0.2 2,899,367 - Psyr_2491 0.76 +0.8 2,899,367 - Psyr_2491 0.76 +0.3 2,899,469 - Psyr_2491 0.81 -1.2 2,899,697 - -2.4 2,899,992 - -0.3 2,900,083 + -1.2 2,900,084 - +0.8 2,900,154 - -0.0 2,900,183 + -0.3 2,900,183 + -1.9 2,900,184 - -0.1 2,900,222 + Psyr_2492 0.11 +1.2 2,900,222 + Psyr_2492 0.11 -2.1 2,900,222 + Psyr_2492 0.11 -0.3 2,900,453 + Psyr_2492 0.19 +2.2 2,900,454 - Psyr_2492 0.19 +0.1 2,900,514 + Psyr_2492 0.22 -0.0 2,900,514 + Psyr_2492 0.22 +0.2 2,900,634 - Psyr_2492 0.26 -0.6 2,900,634 - Psyr_2492 0.26 +0.3 2,900,634 - Psyr_2492 0.26 +1.6 2,900,849 + Psyr_2492 0.34 -0.0 2,900,849 + Psyr_2492 0.34 +0.7 2,900,850 - Psyr_2492 0.34 -0.9
Or see this region's nucleotide sequence