Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1934

Experiment: KB with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Dimethyl Sulfoxide 1 vol%
2,206,059	+		Psyr_1933	0.28	+1.1
2,206,174	+		Psyr_1933	0.53	+0.3
2,206,174	+		Psyr_1933	0.53	+0.4
2,206,174	+		Psyr_1933	0.53	+1.2
2,206,174	+		Psyr_1933	0.53	+0.8
2,206,174	+		Psyr_1933	0.53	-0.8
2,206,223	+		Psyr_1933	0.63	+1.0
2,206,224	-		Psyr_1933	0.64	+1.6
2,206,301	-		Psyr_1933	0.80	-1.1
2,206,318	-		Psyr_1933	0.84	+0.1
2,206,507	+				-0.1
2,206,507	+				-0.3
2,206,508	-				-0.6
2,206,508	-				+0.5
2,206,508	-				+0.5
2,206,534	+				-0.6
2,206,534	+				-0.4
2,206,534	+				+0.2
2,206,534	+				-0.8
2,206,535	-				-0.7
2,206,535	-				+0.4
2,206,535	-				-0.2
2,206,572	+				+0.1
2,206,572	+				-1.2
2,206,632	-				-0.1
2,206,644	+				-0.4
2,206,644	+				-2.3
2,206,644	+				+0.0
2,206,645	-				-2.0
2,206,645	-				-0.2
2,206,684	+				-0.4
2,206,684	+				+0.6
2,206,684	+				+0.8
2,206,684	+				-0.6
2,206,685	-				-0.2
2,206,685	-				+0.2
2,206,685	-				-0.3
2,206,685	-				-0.6
2,206,685	-				-0.6
2,206,685	-				-1.7
2,206,685	-				-1.2
2,206,694	+				+1.6
2,206,694	+				+0.5
2,206,694	+				+1.9
2,206,694	+				+0.1
2,206,694	+				-0.7
2,206,695	-				+0.2
2,206,695	-				-0.7
2,206,695	-				-0.4
2,206,695	-				+1.3
2,206,709	+				+0.6
2,206,709	+				-1.3
2,206,754	+				+1.4
2,206,754	+				+1.3
2,206,754	+				-2.0
2,206,754	+				-0.7
2,206,754	+				-1.6
2,206,755	-				+0.6
2,206,755	-				+0.6
2,206,755	-				+2.0
2,206,755	-				+0.8
2,206,755	-				+0.6
2,206,755	-				+1.0
2,206,786	+				+0.8
2,206,786	+				+0.2
2,206,787	-				+0.6
2,206,827	+				-0.4
2,206,874	+				+0.4
2,206,984	+				+0.6
2,206,984	+				+0.9
2,206,984	+				+0.6
2,206,984	+				-0.6
2,206,985	-				-0.7
2,206,985	-				-0.7
2,206,985	-				+1.3
2,207,000	-				-1.6
2,207,000	-				+0.6
2,207,015	+				+1.1
2,207,016	-				-0.3
2,207,043	+				-0.5
2,207,063	-				-1.4
2,207,096	-				-0.6
2,207,096	-				-3.0
2,207,168	+		Psyr_1934	0.17	-3.0
2,207,168	+		Psyr_1934	0.17	-1.1
2,207,169	-		Psyr_1934	0.18	+0.0
2,207,170	+		Psyr_1934	0.18	-1.4
2,207,172	+		Psyr_1934	0.18	+1.0
2,207,172	+		Psyr_1934	0.18	-2.9
2,207,172	+		Psyr_1934	0.18	-1.1
2,207,172	+		Psyr_1934	0.18	-1.1
2,207,172	+		Psyr_1934	0.18	-1.0
2,207,173	-		Psyr_1934	0.18	+1.1
2,207,213	+		Psyr_1934	0.25	-1.7
2,207,214	-		Psyr_1934	0.25	-3.7
2,207,215	+		Psyr_1934	0.25	-0.6
2,207,215	+		Psyr_1934	0.25	-1.7
2,207,217	+		Psyr_1934	0.25	-0.5
2,207,217	+		Psyr_1934	0.25	+1.1
2,207,299	+		Psyr_1934	0.38	-0.8
2,207,391	+		Psyr_1934	0.53	-1.0
2,207,490	-		Psyr_1934	0.68	-1.7
2,207,569	+		Psyr_1934	0.81	-0.4
2,207,570	-		Psyr_1934	0.81	-1.7
2,207,588	+		Psyr_1934	0.83	-0.4
2,207,635	+				+0.1
2,207,636	-				-2.2
2,207,738	+				-1.6
2,207,747	+				-2.7
2,207,787	+				-1.6
2,207,822	-				-1.2
2,207,849	-				-0.2
2,207,906	-				-1.6
2,207,954	-				+0.3
2,207,958	-				-3.6
2,208,051	+				-1.2
2,208,053	+				-3.7
2,208,054	-				-1.7
2,208,118	+		Psyr_1935	0.11	-2.2
2,208,131	-		Psyr_1935	0.14	-1.0
2,208,234	-		Psyr_1935	0.35	-0.4
2,208,293	+		Psyr_1935	0.47	-1.2
2,208,299	+		Psyr_1935	0.48	-2.7
2,208,301	+		Psyr_1935	0.48	-0.8
2,208,369	+		Psyr_1935	0.62	-1.6
2,208,369	+		Psyr_1935	0.62	-1.1
2,208,370	-		Psyr_1935	0.62	-2.7
2,208,373	+		Psyr_1935	0.63	-3.2
2,208,374	-		Psyr_1935	0.63	+0.9
2,208,374	-		Psyr_1935	0.63	-2.9
2,208,476	+		Psyr_1935	0.84	-0.9
2,208,476	+		Psyr_1935	0.84	-0.2
2,208,477	-		Psyr_1935	0.84	-0.8
2,208,483	-				+0.6
2,208,539	-				-0.7
2,208,556	+				-0.4
2,208,556	+				-0.2
2,208,556	+				-0.7
2,208,557	-				+2.2
2,208,587	-				-0.1
2,208,587	-				-1.4
2,208,591	+				+0.6
2,208,591	+				+2.6
2,208,591	+				+1.1
2,208,591	+				+0.2
2,208,596	+				+0.7
2,208,597	-				-0.4
2,208,608	-				+1.2