Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1534

Experiment: KB with Dimethyl Sulfoxide 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1532 and Psyr_1533 overlap by 4 nucleotidesPsyr_1533 and Psyr_1534 are separated by 1 nucleotidesPsyr_1534 and Psyr_1535 are separated by 349 nucleotides Psyr_1532: Psyr_1532 - hypothetical protein, at 1,721,718 to 1,722,419 _1532 Psyr_1533: Psyr_1533 - hypothetical protein, at 1,722,416 to 1,723,171 _1533 Psyr_1534: Psyr_1534 - chromosome partitioning related protein, at 1,723,173 to 1,724,033 _1534 Psyr_1535: Psyr_1535 - CDS, at 1,724,383 to 1,724,826 _1535 Position (kb) 1723 1724 1725Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1722.240 kb on + strand, within Psyr_1532at 1722.241 kb on - strand, within Psyr_1532at 1722.302 kb on + strand, within Psyr_1532at 1722.341 kb on + strand, within Psyr_1532at 1722.505 kb on + strand, within Psyr_1533at 1722.505 kb on + strand, within Psyr_1533at 1722.574 kb on - strand, within Psyr_1533at 1722.574 kb on - strand, within Psyr_1533at 1722.662 kb on + strand, within Psyr_1533at 1722.662 kb on + strand, within Psyr_1533at 1722.662 kb on + strand, within Psyr_1533at 1722.662 kb on + strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.663 kb on - strand, within Psyr_1533at 1722.709 kb on + strand, within Psyr_1533at 1722.709 kb on + strand, within Psyr_1533at 1722.726 kb on + strand, within Psyr_1533at 1722.727 kb on - strand, within Psyr_1533at 1722.727 kb on - strand, within Psyr_1533at 1722.727 kb on - strand, within Psyr_1533at 1722.738 kb on + strand, within Psyr_1533at 1722.738 kb on + strand, within Psyr_1533at 1722.739 kb on - strand, within Psyr_1533at 1722.739 kb on - strand, within Psyr_1533at 1722.816 kb on + strand, within Psyr_1533at 1722.816 kb on + strandat 1722.816 kb on + strand, within Psyr_1533at 1722.816 kb on + strand, within Psyr_1533at 1722.816 kb on + strand, within Psyr_1533at 1722.817 kb on - strand, within Psyr_1533at 1722.834 kb on - strand, within Psyr_1533at 1722.834 kb on - strand, within Psyr_1533at 1722.984 kb on + strand, within Psyr_1533at 1722.984 kb on + strand, within Psyr_1533at 1722.984 kb on + strand, within Psyr_1533at 1722.984 kb on + strand, within Psyr_1533at 1722.985 kb on - strand, within Psyr_1533at 1722.985 kb on - strand, within Psyr_1533at 1723.021 kb on + strand, within Psyr_1533at 1723.034 kb on + strandat 1723.035 kb on - strand, within Psyr_1533at 1723.102 kb on - strandat 1723.136 kb on - strandat 1723.278 kb on + strand, within Psyr_1534at 1723.346 kb on + strand, within Psyr_1534at 1723.346 kb on + strand, within Psyr_1534at 1723.346 kb on + strand, within Psyr_1534at 1723.346 kb on + strand, within Psyr_1534at 1723.346 kb on + strand, within Psyr_1534at 1723.347 kb on - strand, within Psyr_1534at 1723.347 kb on - strand, within Psyr_1534at 1723.366 kb on - strand, within Psyr_1534at 1723.479 kb on + strand, within Psyr_1534at 1723.479 kb on + strand, within Psyr_1534at 1723.479 kb on + strand, within Psyr_1534at 1723.480 kb on - strand, within Psyr_1534at 1723.749 kb on - strand, within Psyr_1534at 1723.812 kb on + strand, within Psyr_1534at 1723.839 kb on - strand, within Psyr_1534at 1723.857 kb on + strand, within Psyr_1534at 1723.858 kb on - strand, within Psyr_1534at 1723.891 kb on + strand, within Psyr_1534at 1723.891 kb on + strand, within Psyr_1534at 1723.891 kb on + strand, within Psyr_1534at 1723.891 kb on + strand, within Psyr_1534at 1723.892 kb on - strand, within Psyr_1534at 1723.892 kb on - strand, within Psyr_1534at 1723.892 kb on - strand, within Psyr_1534at 1723.892 kb on - strand, within Psyr_1534at 1723.892 kb on - strand, within Psyr_1534at 1723.911 kb on + strand, within Psyr_1534at 1723.992 kb on - strandat 1723.992 kb on - strandat 1723.992 kb on - strandat 1724.025 kb on + strandat 1724.025 kb on + strandat 1724.025 kb on + strandat 1724.026 kb on - strandat 1724.026 kb on - strandat 1724.026 kb on - strandat 1724.026 kb on - strandat 1724.029 kb on + strandat 1724.029 kb on + strandat 1724.029 kb on + strandat 1724.029 kb on + strandat 1724.029 kb on + strandat 1724.029 kb on + strandat 1724.029 kb on + strandat 1724.029 kb on + strandat 1724.029 kb on + strandat 1724.029 kb on + strandat 1724.029 kb on + strandat 1724.029 kb on + strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.030 kb on - strandat 1724.059 kb on + strandat 1724.059 kb on + strandat 1724.059 kb on + strandat 1724.059 kb on + strandat 1724.135 kb on + strandat 1724.149 kb on + strandat 1724.149 kb on + strandat 1724.252 kb on - strandat 1724.294 kb on + strandat 1724.416 kb on + strandat 1724.434 kb on + strand, within Psyr_1535at 1724.434 kb on + strand, within Psyr_1535at 1724.434 kb on + strand, within Psyr_1535at 1724.434 kb on + strand, within Psyr_1535at 1724.434 kb on + strand, within Psyr_1535at 1724.435 kb on - strand, within Psyr_1535at 1724.435 kb on - strand, within Psyr_1535at 1724.435 kb on - strand, within Psyr_1535at 1724.445 kb on - strand, within Psyr_1535at 1724.445 kb on - strand, within Psyr_1535at 1724.470 kb on + strand, within Psyr_1535at 1724.470 kb on + strand, within Psyr_1535at 1724.470 kb on + strand, within Psyr_1535at 1724.470 kb on + strand, within Psyr_1535at 1724.470 kb on + strand, within Psyr_1535at 1724.470 kb on + strand, within Psyr_1535at 1724.470 kb on + strand, within Psyr_1535at 1724.470 kb on + strand, within Psyr_1535at 1724.471 kb on - strand, within Psyr_1535at 1724.471 kb on - strand, within Psyr_1535at 1724.471 kb on - strand, within Psyr_1535at 1724.471 kb on - strand, within Psyr_1535at 1724.471 kb on - strand, within Psyr_1535at 1724.471 kb on - strand, within Psyr_1535at 1724.471 kb on - strand, within Psyr_1535at 1724.473 kb on + strand, within Psyr_1535at 1724.474 kb on - strand, within Psyr_1535at 1724.474 kb on - strand, within Psyr_1535at 1724.474 kb on - strand, within Psyr_1535at 1724.483 kb on + strand, within Psyr_1535at 1724.483 kb on + strand, within Psyr_1535at 1724.487 kb on - strand, within Psyr_1535at 1724.541 kb on - strand, within Psyr_1535at 1724.572 kb on + strand, within Psyr_1535at 1724.572 kb on + strand, within Psyr_1535at 1724.573 kb on - strand, within Psyr_1535at 1724.573 kb on - strand, within Psyr_1535at 1724.588 kb on + strand, within Psyr_1535at 1724.588 kb on + strand, within Psyr_1535at 1724.589 kb on - strand, within Psyr_1535at 1724.589 kb on - strand, within Psyr_1535at 1724.622 kb on + strand, within Psyr_1535at 1724.694 kb on + strand, within Psyr_1535at 1724.695 kb on - strand, within Psyr_1535at 1724.695 kb on - strand, within Psyr_1535at 1724.695 kb on - strand, within Psyr_1535at 1724.695 kb on - strand, within Psyr_1535at 1724.782 kb on + strandat 1724.784 kb on + strandat 1724.784 kb on + strandat 1724.784 kb on + strandat 1724.784 kb on + strandat 1724.784 kb on + strandat 1724.784 kb on + strandat 1724.784 kb on + strandat 1724.785 kb on - strandat 1724.785 kb on - strandat 1724.785 kb on - strandat 1724.785 kb on - strandat 1724.785 kb on - strandat 1724.824 kb on + strandat 1724.824 kb on + strandat 1724.868 kb on - strandat 1724.868 kb on - strandat 1724.868 kb on - strandat 1724.868 kb on - strandat 1724.873 kb on + strandat 1724.873 kb on + strandat 1724.874 kb on - strandat 1724.882 kb on + strandat 1724.915 kb on + strandat 1724.930 kb on + strandat 1724.997 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol%
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1,722,240 + Psyr_1532 0.74 -1.1
1,722,241 - Psyr_1532 0.75 -2.6
1,722,302 + Psyr_1532 0.83 +0.1
1,722,341 + Psyr_1532 0.89 -0.5
1,722,505 + Psyr_1533 0.12 -0.3
1,722,505 + Psyr_1533 0.12 -0.4
1,722,574 - Psyr_1533 0.21 +1.5
1,722,574 - Psyr_1533 0.21 +0.1
1,722,662 + Psyr_1533 0.33 -1.1
1,722,662 + Psyr_1533 0.33 +0.1
1,722,662 + Psyr_1533 0.33 -0.3
1,722,662 + Psyr_1533 0.33 +0.3
1,722,663 - Psyr_1533 0.33 +0.2
1,722,663 - Psyr_1533 0.33 +0.4
1,722,663 - Psyr_1533 0.33 +0.1
1,722,663 - Psyr_1533 0.33 -0.3
1,722,663 - Psyr_1533 0.33 +0.3
1,722,663 - Psyr_1533 0.33 -0.0
1,722,709 + Psyr_1533 0.39 +1.5
1,722,709 + Psyr_1533 0.39 +0.3
1,722,726 + Psyr_1533 0.41 -0.3
1,722,727 - Psyr_1533 0.41 +0.9
1,722,727 - Psyr_1533 0.41 -1.4
1,722,727 - Psyr_1533 0.41 -0.4
1,722,738 + Psyr_1533 0.43 -1.5
1,722,738 + Psyr_1533 0.43 +1.5
1,722,739 - Psyr_1533 0.43 +1.1
1,722,739 - Psyr_1533 0.43 -0.7
1,722,816 + Psyr_1533 0.53 -0.9
1,722,816 + -1.9
1,722,816 + Psyr_1533 0.53 +1.0
1,722,816 + Psyr_1533 0.53 -0.4
1,722,816 + Psyr_1533 0.53 -0.1
1,722,817 - Psyr_1533 0.53 -0.1
1,722,834 - Psyr_1533 0.55 +0.1
1,722,834 - Psyr_1533 0.55 -0.7
1,722,984 + Psyr_1533 0.75 -0.6
1,722,984 + Psyr_1533 0.75 -1.6
1,722,984 + Psyr_1533 0.75 -0.1
1,722,984 + Psyr_1533 0.75 -1.3
1,722,985 - Psyr_1533 0.75 +0.7
1,722,985 - Psyr_1533 0.75 +0.5
1,723,021 + Psyr_1533 0.80 +0.7
1,723,034 + -0.3
1,723,035 - Psyr_1533 0.82 +1.1
1,723,102 - -0.2
1,723,136 - -1.0
1,723,278 + Psyr_1534 0.12 +2.6
1,723,346 + Psyr_1534 0.20 +0.1
1,723,346 + Psyr_1534 0.20 -0.7
1,723,346 + Psyr_1534 0.20 -0.8
1,723,346 + Psyr_1534 0.20 +0.5
1,723,346 + Psyr_1534 0.20 +0.6
1,723,347 - Psyr_1534 0.20 -1.3
1,723,347 - Psyr_1534 0.20 +1.2
1,723,366 - Psyr_1534 0.22 +2.7
1,723,479 + Psyr_1534 0.36 +0.7
1,723,479 + Psyr_1534 0.36 -0.2
1,723,479 + Psyr_1534 0.36 +0.7
1,723,480 - Psyr_1534 0.36 -0.3
1,723,749 - Psyr_1534 0.67 +0.4
1,723,812 + Psyr_1534 0.74 +1.8
1,723,839 - Psyr_1534 0.77 +0.7
1,723,857 + Psyr_1534 0.79 +0.3
1,723,858 - Psyr_1534 0.80 +0.3
1,723,891 + Psyr_1534 0.83 -0.6
1,723,891 + Psyr_1534 0.83 -0.5
1,723,891 + Psyr_1534 0.83 +1.2
1,723,891 + Psyr_1534 0.83 +0.1
1,723,892 - Psyr_1534 0.84 +0.4
1,723,892 - Psyr_1534 0.84 +0.2
1,723,892 - Psyr_1534 0.84 -0.1
1,723,892 - Psyr_1534 0.84 +2.1
1,723,892 - Psyr_1534 0.84 +1.3
1,723,911 + Psyr_1534 0.86 +0.1
1,723,992 - +0.5
1,723,992 - +0.1
1,723,992 - +0.7
1,724,025 + -0.4
1,724,025 + -0.3
1,724,025 + -0.3
1,724,026 - +0.3
1,724,026 - +0.2
1,724,026 - -0.5
1,724,026 - -1.1
1,724,029 + +1.1
1,724,029 + +0.1
1,724,029 + -0.0
1,724,029 + +1.6
1,724,029 + -0.3
1,724,029 + +0.1
1,724,029 + +0.1
1,724,029 + -0.3
1,724,029 + -0.5
1,724,029 + -1.9
1,724,029 + +0.7
1,724,029 + +0.2
1,724,030 - -0.4
1,724,030 - -0.7
1,724,030 - +0.3
1,724,030 - -0.6
1,724,030 - -2.1
1,724,030 - +0.1
1,724,030 - -0.3
1,724,030 - -0.3
1,724,030 - -0.8
1,724,030 - -0.7
1,724,030 - -1.6
1,724,030 - -1.6
1,724,030 - -2.4
1,724,030 - +0.3
1,724,059 + -0.9
1,724,059 + +0.6
1,724,059 + +0.1
1,724,059 + -0.1
1,724,135 + +1.0
1,724,149 + -0.1
1,724,149 + +1.0
1,724,252 - -2.6
1,724,294 + -1.4
1,724,416 + -1.6
1,724,434 + Psyr_1535 0.11 -0.1
1,724,434 + Psyr_1535 0.11 +1.1
1,724,434 + Psyr_1535 0.11 -0.1
1,724,434 + Psyr_1535 0.11 -2.4
1,724,434 + Psyr_1535 0.11 -0.3
1,724,435 - Psyr_1535 0.12 -1.0
1,724,435 - Psyr_1535 0.12 +0.1
1,724,435 - Psyr_1535 0.12 +1.2
1,724,445 - Psyr_1535 0.14 -0.3
1,724,445 - Psyr_1535 0.14 -0.1
1,724,470 + Psyr_1535 0.20 -0.5
1,724,470 + Psyr_1535 0.20 -2.4
1,724,470 + Psyr_1535 0.20 -0.2
1,724,470 + Psyr_1535 0.20 +0.6
1,724,470 + Psyr_1535 0.20 -1.1
1,724,470 + Psyr_1535 0.20 -0.3
1,724,470 + Psyr_1535 0.20 -0.6
1,724,470 + Psyr_1535 0.20 +0.4
1,724,471 - Psyr_1535 0.20 +0.2
1,724,471 - Psyr_1535 0.20 +0.7
1,724,471 - Psyr_1535 0.20 +0.1
1,724,471 - Psyr_1535 0.20 -0.0
1,724,471 - Psyr_1535 0.20 -1.7
1,724,471 - Psyr_1535 0.20 -0.5
1,724,471 - Psyr_1535 0.20 +0.1
1,724,473 + Psyr_1535 0.20 -0.6
1,724,474 - Psyr_1535 0.20 +0.3
1,724,474 - Psyr_1535 0.20 -1.6
1,724,474 - Psyr_1535 0.20 -0.9
1,724,483 + Psyr_1535 0.23 +1.7
1,724,483 + Psyr_1535 0.23 -0.9
1,724,487 - Psyr_1535 0.23 +1.0
1,724,541 - Psyr_1535 0.36 +1.7
1,724,572 + Psyr_1535 0.43 +0.2
1,724,572 + Psyr_1535 0.43 +1.1
1,724,573 - Psyr_1535 0.43 +0.8
1,724,573 - Psyr_1535 0.43 +0.4
1,724,588 + Psyr_1535 0.46 +0.5
1,724,588 + Psyr_1535 0.46 +0.1
1,724,589 - Psyr_1535 0.46 +1.0
1,724,589 - Psyr_1535 0.46 -0.9
1,724,622 + Psyr_1535 0.54 -0.9
1,724,694 + Psyr_1535 0.70 +0.5
1,724,695 - Psyr_1535 0.70 -0.3
1,724,695 - Psyr_1535 0.70 +1.0
1,724,695 - Psyr_1535 0.70 -1.1
1,724,695 - Psyr_1535 0.70 -0.5
1,724,782 + +0.5
1,724,784 + -0.3
1,724,784 + -1.3
1,724,784 + -1.3
1,724,784 + -0.0
1,724,784 + -1.1
1,724,784 + -0.7
1,724,784 + -1.3
1,724,785 - -0.9
1,724,785 - -3.7
1,724,785 - -1.0
1,724,785 - +1.0
1,724,785 - -2.1
1,724,824 + -0.7
1,724,824 + -1.9
1,724,868 - -1.6
1,724,868 - -3.0
1,724,868 - +0.9
1,724,868 - -1.9
1,724,873 + -1.6
1,724,873 + -1.1
1,724,874 - -1.1
1,724,882 + -1.4
1,724,915 + -1.1
1,724,930 + +0.5
1,724,997 + +0.3

Or see this region's nucleotide sequence