Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1521

Experiment: KB with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Dimethyl Sulfoxide 1 vol%
1,709,229	+		Psyr_1520	0.49	+0.0
1,709,229	+		Psyr_1520	0.49	-0.0
1,709,229	+		Psyr_1520	0.49	-0.5
1,709,230	-		Psyr_1520	0.49	+0.1
1,709,359	+		Psyr_1520	0.56	-0.2
1,709,359	+		Psyr_1520	0.56	+1.3
1,709,359	+		Psyr_1520	0.56	+0.5
1,709,372	+		Psyr_1520	0.57	-0.4
1,709,562	+		Psyr_1520	0.66	+0.3
1,709,562	+		Psyr_1520	0.66	-0.7
1,709,562	+		Psyr_1520	0.66	-0.5
1,709,562	+		Psyr_1520	0.66	-0.7
1,709,562	+		Psyr_1520	0.66	+0.4
1,709,562	+		Psyr_1520	0.66	-0.7
1,709,563	-		Psyr_1520	0.66	+1.0
1,709,563	-		Psyr_1520	0.66	-0.5
1,709,563	-		Psyr_1520	0.66	+1.3
1,709,563	-		Psyr_1520	0.66	+0.4
1,709,563	-		Psyr_1520	0.66	-0.5
1,709,563	-		Psyr_1520	0.66	-1.6
1,709,563	-		Psyr_1520	0.66	-0.9
1,709,566	+		Psyr_1520	0.66	-2.4
1,709,567	-		Psyr_1520	0.67	+1.3
1,709,567	-		Psyr_1520	0.67	-0.3
1,709,630	-		Psyr_1520	0.70	+1.4
1,709,823	-		Psyr_1520	0.80	-0.5
1,709,823	-		Psyr_1520	0.80	+0.6
1,709,823	-		Psyr_1520	0.80	-0.4
1,709,938	+		Psyr_1520	0.86	-0.1
1,709,938	+		Psyr_1520	0.86	-2.6
1,709,938	+		Psyr_1520	0.86	-0.5
1,709,938	+		Psyr_1520	0.86	-0.9
1,709,939	-		Psyr_1520	0.86	+1.1
1,710,029	+				+0.4
1,710,029	+				-1.9
1,710,030	-				+0.6
1,710,030	-				-1.7
1,710,084	-				-0.6
1,710,128	+				-0.3
1,710,128	+				-1.3
1,710,128	+				-0.9
1,710,128	+				+1.3
1,710,128	+				-2.5
1,710,129	-				+0.1
1,710,129	-				-0.2
1,710,129	-				-1.0
1,710,129	-				+1.5
1,710,129	-				+0.9
1,710,129	-				+0.3
1,710,129	-				-0.6
1,710,129	-				-1.1
1,710,129	-				+1.7
1,710,132	+				-0.9
1,710,133	-				+0.2
1,710,133	-				+0.3
1,710,331	-				+0.9
1,710,358	-				-0.6
1,710,358	-				-1.3
1,710,385	+				+0.7
1,710,385	+				-0.6
1,710,385	+				-0.1
1,710,385	+				+0.1
1,710,386	-				+0.4
1,710,445	-		Psyr_1521	0.12	-0.1
1,710,456	+		Psyr_1521	0.12	-0.2
1,710,457	-		Psyr_1521	0.12	+0.1
1,710,457	-		Psyr_1521	0.12	-0.5
1,710,457	-		Psyr_1521	0.12	+0.4
1,710,475	-		Psyr_1521	0.13	+0.4
1,710,475	-		Psyr_1521	0.13	-0.7
1,710,475	-		Psyr_1521	0.13	+3.7
1,710,560	-		Psyr_1521	0.18	+0.5
1,710,581	+		Psyr_1521	0.19	-0.3
1,710,596	+		Psyr_1521	0.20	-1.0
1,710,596	+		Psyr_1521	0.20	+0.7
1,710,596	+		Psyr_1521	0.20	-0.3
1,710,596	+		Psyr_1521	0.20	-0.3
1,710,596	+		Psyr_1521	0.20	+0.4
1,710,596	+		Psyr_1521	0.20	-1.3
1,710,596	+		Psyr_1521	0.20	-0.9
1,710,597	-		Psyr_1521	0.20	+0.9
1,710,597	-		Psyr_1521	0.20	+0.7
1,710,597	-		Psyr_1521	0.20	-0.9
1,710,597	-		Psyr_1521	0.20	+0.1
1,710,597	-		Psyr_1521	0.20	-0.3
1,710,597	-		Psyr_1521	0.20	-0.4
1,710,597	-		Psyr_1521	0.20	-0.3
1,710,637	+		Psyr_1521	0.22	-0.5
1,710,637	+		Psyr_1521	0.22	-0.3
1,710,637	+		Psyr_1521	0.22	+0.5
1,710,638	-		Psyr_1521	0.22	+0.3
1,710,638	-		Psyr_1521	0.22	+0.4
1,710,638	-		Psyr_1521	0.22	-0.3
1,710,656	-		Psyr_1521	0.23	-0.3
1,710,656	-		Psyr_1521	0.23	-1.6
1,710,656	-		Psyr_1521	0.23	-0.1
1,710,681	+		Psyr_1521	0.24	-0.8
1,710,681	+		Psyr_1521	0.24	-0.3
1,710,811	+		Psyr_1521	0.31	-0.4
1,710,811	+		Psyr_1521	0.31	-0.7
1,710,811	+		Psyr_1521	0.31	-0.9
1,710,811	+		Psyr_1521	0.31	-1.3
1,710,812	-		Psyr_1521	0.31	+1.2
1,710,812	-		Psyr_1521	0.31	-1.9
1,710,812	-		Psyr_1521	0.31	-1.1
1,710,821	-		Psyr_1521	0.32	+0.4
1,710,836	-		Psyr_1521	0.32	-0.5
1,710,854	+		Psyr_1521	0.33	-0.1
1,710,855	-		Psyr_1521	0.33	+1.3
1,710,901	+		Psyr_1521	0.36	-0.7
1,710,901	+		Psyr_1521	0.36	-0.5
1,710,901	+		Psyr_1521	0.36	-1.2
1,710,944	-		Psyr_1521	0.38	+0.7
1,711,002	+		Psyr_1521	0.41	-0.6
1,711,002	+		Psyr_1521	0.41	-0.3
1,711,002	+		Psyr_1521	0.41	-0.4
1,711,002	+		Psyr_1521	0.41	-0.7
1,711,021	+		Psyr_1521	0.42	+0.2
1,711,021	+		Psyr_1521	0.42	-1.4
1,711,096	+		Psyr_1521	0.46	-0.3
1,711,179	-		Psyr_1521	0.51	-0.8
1,711,448	-		Psyr_1521	0.65	-0.3
1,711,448	-		Psyr_1521	0.65	+0.7
1,711,485	-		Psyr_1521	0.67	+1.7
1,711,586	+		Psyr_1521	0.72	-0.9
1,711,586	+		Psyr_1521	0.72	+0.7
1,711,586	+		Psyr_1521	0.72	+1.9
1,711,586	+		Psyr_1521	0.72	-1.3
1,711,587	-		Psyr_1521	0.72	-1.2
1,711,607	+		Psyr_1521	0.73	+0.1
1,711,635	+		Psyr_1521	0.75	-0.1
1,711,652	+		Psyr_1521	0.76	+0.9
1,711,652	+		Psyr_1521	0.76	+0.7
1,711,652	+				-0.9
1,711,653	-		Psyr_1521	0.76	+0.7
1,711,653	-		Psyr_1521	0.76	+0.5
1,711,653	-		Psyr_1521	0.76	+0.7
1,711,669	+		Psyr_1521	0.77	-0.6
1,711,669	+		Psyr_1521	0.77	+0.4
1,711,670	-		Psyr_1521	0.77	+0.7
1,711,671	+		Psyr_1521	0.77	-0.3
1,711,671	+		Psyr_1521	0.77	-0.2
1,711,672	-		Psyr_1521	0.77	-1.2
1,711,672	-		Psyr_1521	0.77	-0.4
1,711,672	-		Psyr_1521	0.77	-2.4
1,711,672	-		Psyr_1521	0.77	-0.6
1,711,674	+		Psyr_1521	0.77	+1.6
1,711,674	+		Psyr_1521	0.77	-0.8
1,711,674	+		Psyr_1521	0.77	-0.9
1,711,674	+		Psyr_1521	0.77	-0.9
1,711,674	+		Psyr_1521	0.77	+0.9
1,711,674	+		Psyr_1521	0.77	-2.3
1,711,674	+		Psyr_1521	0.77	-1.1
1,711,675	-		Psyr_1521	0.77	-0.1
1,711,675	-		Psyr_1521	0.77	-0.0
1,711,675	-		Psyr_1521	0.77	+1.0
1,711,675	-		Psyr_1521	0.77	-0.6
1,711,753	-		Psyr_1521	0.81	-0.2
1,711,859	+		Psyr_1521	0.87	-2.0
1,711,859	+		Psyr_1521	0.87	-0.4
1,711,860	-		Psyr_1521	0.87	-1.3
1,711,860	-		Psyr_1521	0.87	-0.3
1,711,860	-		Psyr_1521	0.87	+1.4
1,711,860	-		Psyr_1521	0.87	+2.3
1,711,961	+				+0.7
1,711,969	+				+0.5
1,711,969	+				-0.3
1,711,997	-				-0.6
1,712,094	+				+0.5
1,712,094	+				-0.3
1,712,150	-				+0.7
1,712,176	-				+0.7
1,712,314	+				+0.7
1,712,314	+				-0.6
1,712,314	+				+1.0
1,712,314	+				+0.7
1,712,314	+				-0.8
1,712,315	-				+0.5
1,712,315	-				+0.2
1,712,315	-				-1.6
1,712,398	+				-0.2
1,712,436	-				-0.1
1,712,436	-				-1.0
1,712,444	+				-0.2
1,712,444	+				-0.1
1,712,444	+				+0.5
1,712,444	+				-0.1
1,712,445	-				-0.5
1,712,445	-				+0.3
1,712,445	-				+0.2
1,712,445	-				+0.5
1,712,445	-				-1.4
1,712,445	-				-0.5
1,712,445	-				+0.4
1,712,445	-				-0.6
1,712,450	+				-1.1
1,712,450	+				+1.3
1,712,450	+				+0.5
1,712,450	+				+0.2
1,712,450	+				-0.7
1,712,450	+				-2.3
1,712,451	-				+0.5
1,712,451	-				-0.6
1,712,451	-				+0.0
1,712,451	-				-0.1
1,712,451	-				-1.6
1,712,490	+				+0.2
1,712,490	+				+0.7
1,712,491	-				-0.9
1,712,491	-				+0.0
1,712,493	+				-1.0
1,712,494	-				-0.0
1,712,494	-				-1.4
1,712,494	-				-1.1
1,712,494	-				+1.7
1,712,551	+				-0.7
1,712,551	+				-0.0
1,712,551	+				-0.7
1,712,551	+				+1.1
1,712,551	+				+0.8
1,712,551	+				-0.9
1,712,552	-				-1.9
1,712,552	-				-0.0
1,712,552	-				+0.1
1,712,552	-				-1.0
1,712,552	-				-1.6
1,712,620	+				-1.3
1,712,666	+				-0.3
1,712,694	+				+0.3
1,712,694	+				-0.3
1,712,694	+				+0.4
1,712,694	+				-0.2
1,712,694	+				-1.1
1,712,694	+				+1.0
1,712,694	+				+0.5
1,712,694	+				-0.3
1,712,694	+				+1.7
1,712,694	+				-0.4
1,712,694	+				-1.3
1,712,694	+				-1.0
1,712,695	-				-0.4
1,712,695	-				-0.9
1,712,695	-				-0.2
1,712,695	-				-0.6
1,712,695	-				-1.8
1,712,695	-				+0.7
1,712,695	-				-1.3
1,712,695	-				-0.6
1,712,744	+				-1.6
1,712,744	+				-0.1
1,712,745	-				-0.1
1,712,745	-				-1.3
1,712,745	-				+1.1
1,712,745	-				-0.1
1,712,781	+				+0.3
1,712,837	+				-0.7
1,712,837	+				-0.3
1,712,838	-				-0.6
1,712,838	-				+0.6
1,712,838	-				-1.2
1,712,838	-				+0.4
1,712,926	+				+1.6
1,713,016	+		Psyr_1522	0.20	-1.4
1,713,016	+		Psyr_1522	0.20	-0.7
1,713,016	+		Psyr_1522	0.20	-0.3
1,713,017	-		Psyr_1522	0.20	+0.7
1,713,017	-		Psyr_1522	0.20	-2.1
1,713,017	-		Psyr_1522	0.20	+1.3
1,713,017	-		Psyr_1522	0.20	-0.9