Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1424

Experiment: KB with Dimethyl Sulfoxide 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1423 and Psyr_1424 are separated by 113 nucleotidesPsyr_1424 and Psyr_1425 overlap by 14 nucleotides Psyr_1423: Psyr_1423 - Protein of unknown function DUF159, at 1,611,700 to 1,612,392 _1423 Psyr_1424: Psyr_1424 - Peptidase S24, S26A and S26B, at 1,612,506 to 1,612,940 _1424 Psyr_1425: Psyr_1425 - DNA-directed DNA polymerase, at 1,612,927 to 1,614,207 _1425 Position (kb) 1612 1613Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1611.563 kb on - strandat 1611.563 kb on - strandat 1611.639 kb on + strandat 1611.639 kb on + strandat 1611.640 kb on - strandat 1611.640 kb on - strandat 1611.640 kb on - strandat 1611.640 kb on - strandat 1611.834 kb on + strand, within Psyr_1423at 1611.834 kb on + strand, within Psyr_1423at 1611.834 kb on + strand, within Psyr_1423at 1611.834 kb on + strand, within Psyr_1423at 1612.002 kb on + strand, within Psyr_1423at 1612.002 kb on + strand, within Psyr_1423at 1612.002 kb on + strand, within Psyr_1423at 1612.003 kb on - strand, within Psyr_1423at 1612.003 kb on - strand, within Psyr_1423at 1612.003 kb on - strand, within Psyr_1423at 1612.012 kb on - strand, within Psyr_1423at 1612.012 kb on - strand, within Psyr_1423at 1612.032 kb on - strand, within Psyr_1423at 1612.032 kb on - strand, within Psyr_1423at 1612.273 kb on - strand, within Psyr_1423at 1612.273 kb on - strand, within Psyr_1423at 1612.286 kb on + strand, within Psyr_1423at 1612.286 kb on + strand, within Psyr_1423at 1612.286 kb on + strand, within Psyr_1423at 1612.287 kb on - strand, within Psyr_1423at 1612.287 kb on - strand, within Psyr_1423at 1612.294 kb on + strand, within Psyr_1423at 1612.491 kb on - strandat 1612.514 kb on - strandat 1612.605 kb on + strand, within Psyr_1424at 1612.605 kb on + strand, within Psyr_1424at 1612.628 kb on - strand, within Psyr_1424at 1612.781 kb on + strand, within Psyr_1424at 1612.848 kb on - strand, within Psyr_1424at 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.976 kb on - strandat 1612.976 kb on - strandat 1612.976 kb on - strandat 1612.976 kb on - strandat 1613.104 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.164 kb on - strand, within Psyr_1425at 1613.171 kb on - strand, within Psyr_1425at 1613.233 kb on + strand, within Psyr_1425at 1613.233 kb on + strand, within Psyr_1425at 1613.233 kb on + strand, within Psyr_1425at 1613.233 kb on + strand, within Psyr_1425at 1613.234 kb on - strand, within Psyr_1425at 1613.234 kb on - strand, within Psyr_1425at 1613.234 kb on - strand, within Psyr_1425at 1613.319 kb on + strand, within Psyr_1425at 1613.319 kb on + strand, within Psyr_1425at 1613.320 kb on - strand, within Psyr_1425at 1613.320 kb on - strand, within Psyr_1425at 1613.320 kb on - strand, within Psyr_1425at 1613.320 kb on - strand, within Psyr_1425at 1613.320 kb on - strand, within Psyr_1425at 1613.394 kb on + strand, within Psyr_1425at 1613.394 kb on + strand, within Psyr_1425at 1613.394 kb on + strand, within Psyr_1425at 1613.412 kb on + strand, within Psyr_1425at 1613.427 kb on - strand, within Psyr_1425at 1613.427 kb on - strand, within Psyr_1425at 1613.467 kb on - strand, within Psyr_1425at 1613.470 kb on - strand, within Psyr_1425at 1613.526 kb on + strand, within Psyr_1425at 1613.526 kb on + strand, within Psyr_1425at 1613.526 kb on + strand, within Psyr_1425at 1613.527 kb on - strand, within Psyr_1425at 1613.722 kb on - strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.845 kb on + strand, within Psyr_1425at 1613.845 kb on + strand, within Psyr_1425at 1613.845 kb on + strand, within Psyr_1425at 1613.846 kb on - strand, within Psyr_1425at 1613.846 kb on - strand, within Psyr_1425at 1613.846 kb on - strand, within Psyr_1425

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol%
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1,611,563 - +0.5
1,611,563 - +1.1
1,611,639 + +0.6
1,611,639 + +0.3
1,611,640 - +0.4
1,611,640 - -2.3
1,611,640 - +0.2
1,611,640 - -0.4
1,611,834 + Psyr_1423 0.19 -0.3
1,611,834 + Psyr_1423 0.19 -0.8
1,611,834 + Psyr_1423 0.19 +0.2
1,611,834 + Psyr_1423 0.19 +0.3
1,612,002 + Psyr_1423 0.44 -0.4
1,612,002 + Psyr_1423 0.44 +0.1
1,612,002 + Psyr_1423 0.44 -0.3
1,612,003 - Psyr_1423 0.44 +0.4
1,612,003 - Psyr_1423 0.44 +1.7
1,612,003 - Psyr_1423 0.44 -0.1
1,612,012 - Psyr_1423 0.45 +0.0
1,612,012 - Psyr_1423 0.45 -1.7
1,612,032 - Psyr_1423 0.48 -1.6
1,612,032 - Psyr_1423 0.48 +0.5
1,612,273 - Psyr_1423 0.83 +0.7
1,612,273 - Psyr_1423 0.83 -3.1
1,612,286 + Psyr_1423 0.85 +0.3
1,612,286 + Psyr_1423 0.85 -0.3
1,612,286 + Psyr_1423 0.85 -0.6
1,612,287 - Psyr_1423 0.85 -0.3
1,612,287 - Psyr_1423 0.85 +1.5
1,612,294 + Psyr_1423 0.86 -0.6
1,612,491 - +0.1
1,612,514 - +0.7
1,612,605 + Psyr_1424 0.23 +0.2
1,612,605 + Psyr_1424 0.23 -0.3
1,612,628 - Psyr_1424 0.28 -2.1
1,612,781 + Psyr_1424 0.63 -0.1
1,612,848 - Psyr_1424 0.79 -1.4
1,612,911 + +0.4
1,612,911 + +1.3
1,612,911 + -0.8
1,612,911 + +1.2
1,612,911 + +0.4
1,612,911 + +0.4
1,612,911 + +0.2
1,612,911 + +0.2
1,612,911 + +1.4
1,612,911 + +0.7
1,612,976 - +1.6
1,612,976 - -0.5
1,612,976 - -2.1
1,612,976 - -0.6
1,613,104 + Psyr_1425 0.14 +0.0
1,613,161 + Psyr_1425 0.18 -0.9
1,613,161 + Psyr_1425 0.18 -0.8
1,613,161 + Psyr_1425 0.18 +0.3
1,613,161 + Psyr_1425 0.18 +0.6
1,613,161 + Psyr_1425 0.18 +1.6
1,613,161 + Psyr_1425 0.18 -2.3
1,613,161 + Psyr_1425 0.18 -0.1
1,613,162 - Psyr_1425 0.18 -0.4
1,613,162 - Psyr_1425 0.18 -1.1
1,613,162 - Psyr_1425 0.18 -1.1
1,613,162 - Psyr_1425 0.18 -1.4
1,613,162 - Psyr_1425 0.18 -1.4
1,613,162 - Psyr_1425 0.18 +0.5
1,613,164 - Psyr_1425 0.19 -0.2
1,613,171 - Psyr_1425 0.19 -1.3
1,613,233 + Psyr_1425 0.24 +0.4
1,613,233 + Psyr_1425 0.24 +0.7
1,613,233 + Psyr_1425 0.24 -0.4
1,613,233 + Psyr_1425 0.24 +0.4
1,613,234 - Psyr_1425 0.24 -1.0
1,613,234 - Psyr_1425 0.24 -1.6
1,613,234 - Psyr_1425 0.24 -0.7
1,613,319 + Psyr_1425 0.31 +1.7
1,613,319 + Psyr_1425 0.31 -0.8
1,613,320 - Psyr_1425 0.31 -0.3
1,613,320 - Psyr_1425 0.31 +0.9
1,613,320 - Psyr_1425 0.31 -0.6
1,613,320 - Psyr_1425 0.31 +0.3
1,613,320 - Psyr_1425 0.31 +0.4
1,613,394 + Psyr_1425 0.36 -1.0
1,613,394 + Psyr_1425 0.36 +0.3
1,613,394 + Psyr_1425 0.36 -1.6
1,613,412 + Psyr_1425 0.38 +1.3
1,613,427 - Psyr_1425 0.39 -0.7
1,613,427 - Psyr_1425 0.39 +2.1
1,613,467 - Psyr_1425 0.42 -0.2
1,613,470 - Psyr_1425 0.42 +1.1
1,613,526 + Psyr_1425 0.47 +0.7
1,613,526 + Psyr_1425 0.47 +0.0
1,613,526 + Psyr_1425 0.47 -1.3
1,613,527 - Psyr_1425 0.47 -0.0
1,613,722 - Psyr_1425 0.62 -1.1
1,613,743 + Psyr_1425 0.64 +1.9
1,613,743 + Psyr_1425 0.64 +0.4
1,613,743 + Psyr_1425 0.64 -0.1
1,613,743 + Psyr_1425 0.64 -2.3
1,613,743 + Psyr_1425 0.64 +0.2
1,613,743 + Psyr_1425 0.64 +0.2
1,613,743 + Psyr_1425 0.64 -1.2
1,613,744 - Psyr_1425 0.64 -1.3
1,613,744 - Psyr_1425 0.64 -0.0
1,613,744 - Psyr_1425 0.64 +0.7
1,613,744 - Psyr_1425 0.64 -0.3
1,613,744 - Psyr_1425 0.64 +1.3
1,613,744 - Psyr_1425 0.64 +1.0
1,613,744 - Psyr_1425 0.64 +2.5
1,613,744 - Psyr_1425 0.64 +1.4
1,613,744 - Psyr_1425 0.64 -0.7
1,613,744 - Psyr_1425 0.64 -0.7
1,613,845 + Psyr_1425 0.72 +0.2
1,613,845 + Psyr_1425 0.72 +1.5
1,613,845 + Psyr_1425 0.72 -0.6
1,613,846 - Psyr_1425 0.72 -0.3
1,613,846 - Psyr_1425 0.72 +0.3
1,613,846 - Psyr_1425 0.72 -0.6

Or see this region's nucleotide sequence