Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0575

Experiment: KB with Dimethyl Sulfoxide 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0574 and Psyr_0575 overlap by 1 nucleotidesPsyr_0575 and Psyr_0576 are separated by 270 nucleotides Psyr_0574: Psyr_0574 - protease FtsH subunit HflK, at 652,290 to 653,492 _0574 Psyr_0575: Psyr_0575 - protease FtsH subunit HflC, at 653,492 to 654,361 _0575 Psyr_0576: Psyr_0576 - ATP phosphoribosyltransferase regulatory subunit, putative, at 654,632 to 655,819 _0576 Position (kb) 653 654 655Strain fitness (log2 ratio) -2 -1 0 1 2at 652.528 kb on + strand, within Psyr_0574at 652.548 kb on + strand, within Psyr_0574at 652.548 kb on + strand, within Psyr_0574at 652.548 kb on + strand, within Psyr_0574at 652.548 kb on + strand, within Psyr_0574at 652.550 kb on + strand, within Psyr_0574at 652.551 kb on - strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.560 kb on + strand, within Psyr_0574at 652.561 kb on - strand, within Psyr_0574at 652.561 kb on - strand, within Psyr_0574at 652.561 kb on - strand, within Psyr_0574at 652.641 kb on + strand, within Psyr_0574at 652.641 kb on + strand, within Psyr_0574at 652.665 kb on + strand, within Psyr_0574at 652.665 kb on + strand, within Psyr_0574at 652.666 kb on - strand, within Psyr_0574at 652.666 kb on - strand, within Psyr_0574at 652.695 kb on + strand, within Psyr_0574at 652.762 kb on - strand, within Psyr_0574at 653.064 kb on - strand, within Psyr_0574at 653.123 kb on + strand, within Psyr_0574at 653.192 kb on + strand, within Psyr_0574at 653.329 kb on - strand, within Psyr_0574at 653.329 kb on - strand, within Psyr_0574at 653.393 kb on + strandat 653.470 kb on + strandat 653.470 kb on + strandat 653.470 kb on + strandat 653.470 kb on + strandat 653.470 kb on + strandat 653.470 kb on + strandat 653.471 kb on - strandat 653.471 kb on - strandat 653.474 kb on + strandat 653.518 kb on + strandat 653.561 kb on + strandat 653.561 kb on + strandat 653.561 kb on + strandat 653.561 kb on + strandat 653.562 kb on - strandat 653.565 kb on + strandat 653.565 kb on + strandat 653.565 kb on + strandat 653.566 kb on - strandat 653.566 kb on - strandat 653.566 kb on - strandat 653.566 kb on - strandat 653.654 kb on + strand, within Psyr_0575at 653.756 kb on + strand, within Psyr_0575at 653.792 kb on + strand, within Psyr_0575at 653.792 kb on + strand, within Psyr_0575at 653.792 kb on + strand, within Psyr_0575at 653.792 kb on + strand, within Psyr_0575at 654.043 kb on + strand, within Psyr_0575at 654.044 kb on - strand, within Psyr_0575at 654.212 kb on + strand, within Psyr_0575at 654.213 kb on - strand, within Psyr_0575at 654.224 kb on + strand, within Psyr_0575at 654.245 kb on + strand, within Psyr_0575at 654.254 kb on + strand, within Psyr_0575at 654.360 kb on - strandat 654.363 kb on + strandat 654.363 kb on + strandat 654.363 kb on + strandat 654.363 kb on + strandat 654.364 kb on - strandat 654.364 kb on - strandat 654.364 kb on - strandat 654.405 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.421 kb on + strandat 654.558 kb on + strandat 654.678 kb on + strandat 654.708 kb on + strandat 654.901 kb on + strand, within Psyr_0576at 655.005 kb on + strand, within Psyr_0576

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol%
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652,528 + Psyr_0574 0.20 -1.1
652,548 + Psyr_0574 0.21 +0.3
652,548 + Psyr_0574 0.21 +1.9
652,548 + Psyr_0574 0.21 -1.4
652,548 + Psyr_0574 0.21 -1.7
652,550 + Psyr_0574 0.22 +0.3
652,551 - Psyr_0574 0.22 -0.7
652,560 + Psyr_0574 0.22 -1.4
652,560 + Psyr_0574 0.22 -1.1
652,560 + Psyr_0574 0.22 -2.3
652,560 + Psyr_0574 0.22 -0.1
652,560 + Psyr_0574 0.22 +0.6
652,560 + Psyr_0574 0.22 +1.5
652,560 + Psyr_0574 0.22 -0.1
652,560 + Psyr_0574 0.22 -0.7
652,560 + Psyr_0574 0.22 +0.9
652,561 - Psyr_0574 0.23 -1.1
652,561 - Psyr_0574 0.23 -2.1
652,561 - Psyr_0574 0.23 -1.7
652,641 + Psyr_0574 0.29 +1.2
652,641 + Psyr_0574 0.29 +0.6
652,665 + Psyr_0574 0.31 -0.9
652,665 + Psyr_0574 0.31 -1.1
652,666 - Psyr_0574 0.31 -2.4
652,666 - Psyr_0574 0.31 -0.1
652,695 + Psyr_0574 0.34 +1.9
652,762 - Psyr_0574 0.39 -2.7
653,064 - Psyr_0574 0.64 -1.4
653,123 + Psyr_0574 0.69 -0.7
653,192 + Psyr_0574 0.75 +0.2
653,329 - Psyr_0574 0.86 +0.3
653,329 - Psyr_0574 0.86 -0.1
653,393 + -1.7
653,470 + +2.5
653,470 + +0.7
653,470 + +0.9
653,470 + +1.0
653,470 + -1.7
653,470 + -0.4
653,471 - -1.1
653,471 - -0.1
653,474 + +0.3
653,518 + -0.7
653,561 + +0.3
653,561 + -0.3
653,561 + -0.9
653,561 + -0.9
653,562 - +0.9
653,565 + -1.1
653,565 + +0.9
653,565 + +0.2
653,566 - -2.1
653,566 - +0.3
653,566 - -2.1
653,566 - -0.9
653,654 + Psyr_0575 0.19 -1.9
653,756 + Psyr_0575 0.30 -1.6
653,792 + Psyr_0575 0.34 -1.7
653,792 + Psyr_0575 0.34 +0.1
653,792 + Psyr_0575 0.34 +0.3
653,792 + Psyr_0575 0.34 -0.1
654,043 + Psyr_0575 0.63 +0.9
654,044 - Psyr_0575 0.63 -1.9
654,212 + Psyr_0575 0.83 -0.7
654,213 - Psyr_0575 0.83 -2.3
654,224 + Psyr_0575 0.84 -0.1
654,245 + Psyr_0575 0.87 -1.1
654,254 + Psyr_0575 0.88 -0.4
654,360 - +0.3
654,363 + +0.1
654,363 + -0.1
654,363 + +0.9
654,363 + -1.4
654,364 - +0.1
654,364 - +0.6
654,364 - -0.4
654,405 + +1.4
654,421 + -0.6
654,421 + +0.4
654,421 + +0.1
654,421 + -2.3
654,421 + +0.1
654,421 + -0.6
654,421 + -0.9
654,421 + -1.1
654,421 + +0.1
654,558 + -0.7
654,678 + -2.0
654,708 + -0.8
654,901 + Psyr_0576 0.23 +1.6
655,005 + Psyr_0576 0.31 +0.3

Or see this region's nucleotide sequence