Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0513

Experiment: KB with Dimethyl Sulfoxide 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0511 and Psyr_0512 are separated by 7 nucleotidesPsyr_0512 and Psyr_0513 are separated by 226 nucleotidesPsyr_0513 and Psyr_0514 overlap by 38 nucleotides Psyr_0511: Psyr_0511 - conserved hypothetical protein, at 567,369 to 567,665 _0511 Psyr_0512: Psyr_0512 - GCN5-related N-acetyltransferase, at 567,673 to 568,131 _0512 Psyr_0513: Psyr_0513 - amino acid ABC transporter substrate-binding protein, PAAT family, at 568,358 to 569,113 _0513 Psyr_0514: Psyr_0514 - Intergral membrane protein, YccS:Integral membrane protein, YccS/YhfK, at 569,076 to 571,274 _0514 Position (kb) 568 569 570Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 567.399 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.412 kb on - strand, within Psyr_0511at 567.420 kb on + strand, within Psyr_0511at 567.421 kb on - strand, within Psyr_0511at 567.503 kb on + strand, within Psyr_0511at 567.504 kb on - strand, within Psyr_0511at 567.658 kb on - strandat 567.758 kb on + strand, within Psyr_0512at 567.761 kb on + strand, within Psyr_0512at 567.761 kb on + strand, within Psyr_0512at 567.762 kb on - strand, within Psyr_0512at 567.787 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 568.022 kb on + strand, within Psyr_0512at 568.023 kb on - strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.077 kb on - strand, within Psyr_0512at 568.077 kb on - strand, within Psyr_0512at 568.077 kb on - strand, within Psyr_0512at 568.166 kb on + strandat 568.166 kb on + strandat 568.167 kb on - strandat 568.172 kb on + strandat 568.252 kb on - strandat 568.252 kb on - strandat 568.252 kb on - strandat 568.275 kb on + strandat 568.275 kb on + strandat 568.276 kb on - strandat 568.276 kb on - strandat 568.276 kb on - strandat 568.322 kb on + strandat 568.322 kb on + strandat 568.322 kb on + strandat 568.323 kb on - strandat 568.323 kb on - strandat 568.323 kb on - strandat 568.544 kb on + strand, within Psyr_0513at 568.545 kb on - strand, within Psyr_0513at 568.545 kb on - strand, within Psyr_0513at 568.545 kb on - strand, within Psyr_0513at 568.634 kb on - strand, within Psyr_0513at 568.634 kb on - strand, within Psyr_0513at 568.661 kb on + strand, within Psyr_0513at 568.662 kb on - strand, within Psyr_0513at 568.662 kb on - strand, within Psyr_0513at 568.739 kb on + strand, within Psyr_0513at 568.740 kb on - strand, within Psyr_0513at 568.740 kb on - strand, within Psyr_0513at 568.740 kb on - strand, within Psyr_0513at 568.740 kb on - strand, within Psyr_0513at 568.740 kb on - strand, within Psyr_0513at 568.769 kb on + strand, within Psyr_0513at 568.769 kb on + strand, within Psyr_0513at 568.770 kb on - strand, within Psyr_0513at 568.770 kb on - strand, within Psyr_0513at 568.770 kb on - strand, within Psyr_0513at 568.836 kb on + strand, within Psyr_0513at 568.837 kb on - strand, within Psyr_0513at 568.883 kb on + strand, within Psyr_0513at 568.883 kb on + strand, within Psyr_0513at 568.883 kb on + strand, within Psyr_0513at 568.883 kb on + strand, within Psyr_0513at 568.883 kb on + strand, within Psyr_0513at 568.884 kb on - strand, within Psyr_0513at 568.884 kb on - strand, within Psyr_0513at 568.884 kb on - strand, within Psyr_0513at 568.884 kb on - strand, within Psyr_0513at 568.884 kb on - strand, within Psyr_0513at 568.884 kb on - strand, within Psyr_0513at 568.884 kb on - strand, within Psyr_0513at 568.884 kb on - strand, within Psyr_0513at 568.884 kb on - strand, within Psyr_0513at 568.884 kb on - strand, within Psyr_0513at 568.884 kb on - strand, within Psyr_0513at 568.887 kb on + strand, within Psyr_0513at 568.887 kb on + strand, within Psyr_0513at 568.888 kb on - strand, within Psyr_0513at 568.888 kb on - strand, within Psyr_0513at 568.888 kb on - strand, within Psyr_0513at 568.895 kb on + strand, within Psyr_0513at 568.944 kb on + strand, within Psyr_0513at 568.976 kb on - strand, within Psyr_0513at 569.045 kb on - strandat 569.063 kb on + strandat 569.064 kb on - strandat 569.064 kb on - strandat 569.064 kb on - strandat 569.369 kb on + strand, within Psyr_0514at 569.398 kb on + strand, within Psyr_0514at 569.398 kb on + strand, within Psyr_0514at 569.398 kb on + strand, within Psyr_0514at 569.399 kb on - strand, within Psyr_0514at 569.596 kb on + strand, within Psyr_0514at 569.596 kb on + strand, within Psyr_0514at 569.596 kb on + strand, within Psyr_0514at 569.596 kb on + strand, within Psyr_0514at 569.596 kb on + strand, within Psyr_0514at 569.597 kb on - strand, within Psyr_0514at 569.597 kb on - strand, within Psyr_0514at 569.708 kb on + strand, within Psyr_0514at 569.709 kb on - strand, within Psyr_0514at 569.709 kb on - strand, within Psyr_0514at 569.709 kb on - strand, within Psyr_0514at 569.803 kb on + strand, within Psyr_0514at 569.876 kb on + strand, within Psyr_0514

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol%
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567,399 + Psyr_0511 0.10 -1.2
567,411 + Psyr_0511 0.14 +0.5
567,411 + Psyr_0511 0.14 -1.4
567,411 + Psyr_0511 0.14 +0.2
567,412 - Psyr_0511 0.14 -3.0
567,420 + Psyr_0511 0.17 +0.9
567,421 - Psyr_0511 0.18 -0.4
567,503 + Psyr_0511 0.45 +0.9
567,504 - Psyr_0511 0.45 +0.3
567,658 - +0.0
567,758 + Psyr_0512 0.19 +1.7
567,761 + Psyr_0512 0.19 +0.3
567,761 + Psyr_0512 0.19 -0.3
567,762 - Psyr_0512 0.19 +0.7
567,787 + Psyr_0512 0.25 -0.1
567,791 + Psyr_0512 0.26 +0.9
567,791 + Psyr_0512 0.26 -0.5
567,791 + Psyr_0512 0.26 +0.6
567,791 + Psyr_0512 0.26 -0.5
567,791 + Psyr_0512 0.26 +1.3
567,791 + Psyr_0512 0.26 +0.3
567,791 + Psyr_0512 0.26 -0.3
567,791 + Psyr_0512 0.26 -1.9
567,791 + Psyr_0512 0.26 -0.4
567,791 + Psyr_0512 0.26 -2.0
567,791 + Psyr_0512 0.26 +0.3
567,792 - Psyr_0512 0.26 -0.3
567,792 - Psyr_0512 0.26 +0.1
567,792 - Psyr_0512 0.26 +1.0
567,792 - Psyr_0512 0.26 -1.2
567,792 - Psyr_0512 0.26 -0.2
567,792 - Psyr_0512 0.26 +0.8
567,792 - Psyr_0512 0.26 +0.1
567,792 - Psyr_0512 0.26 -0.4
568,022 + Psyr_0512 0.76 -0.1
568,023 - Psyr_0512 0.76 +0.3
568,076 + Psyr_0512 0.88 -0.8
568,076 + Psyr_0512 0.88 +0.4
568,076 + Psyr_0512 0.88 -0.7
568,076 + Psyr_0512 0.88 +0.2
568,076 + Psyr_0512 0.88 +0.3
568,077 - Psyr_0512 0.88 +0.8
568,077 - Psyr_0512 0.88 -1.8
568,077 - Psyr_0512 0.88 +0.2
568,166 + -0.2
568,166 + +0.2
568,167 - -0.3
568,172 + -0.1
568,252 - -0.5
568,252 - -0.2
568,252 - -0.2
568,275 + -0.8
568,275 + +0.1
568,276 - -0.3
568,276 - -2.0
568,276 - +1.1
568,322 + +1.1
568,322 + -1.2
568,322 + +0.1
568,323 - -1.4
568,323 - +0.5
568,323 - -0.1
568,544 + Psyr_0513 0.25 +0.3
568,545 - Psyr_0513 0.25 +0.2
568,545 - Psyr_0513 0.25 +1.5
568,545 - Psyr_0513 0.25 -0.1
568,634 - Psyr_0513 0.37 -1.9
568,634 - Psyr_0513 0.37 -0.5
568,661 + Psyr_0513 0.40 +0.3
568,662 - Psyr_0513 0.40 +0.6
568,662 - Psyr_0513 0.40 +0.4
568,739 + Psyr_0513 0.50 +1.1
568,740 - Psyr_0513 0.51 +0.9
568,740 - Psyr_0513 0.51 +1.2
568,740 - Psyr_0513 0.51 -0.2
568,740 - Psyr_0513 0.51 -0.5
568,740 - Psyr_0513 0.51 +0.1
568,769 + Psyr_0513 0.54 +2.5
568,769 + Psyr_0513 0.54 -0.1
568,770 - Psyr_0513 0.54 +1.0
568,770 - Psyr_0513 0.54 +0.0
568,770 - Psyr_0513 0.54 -0.2
568,836 + Psyr_0513 0.63 +0.4
568,837 - Psyr_0513 0.63 +0.6
568,883 + Psyr_0513 0.69 -1.7
568,883 + Psyr_0513 0.69 +0.6
568,883 + Psyr_0513 0.69 +0.6
568,883 + Psyr_0513 0.69 -0.2
568,883 + Psyr_0513 0.69 +0.0
568,884 - Psyr_0513 0.70 +0.1
568,884 - Psyr_0513 0.70 -0.7
568,884 - Psyr_0513 0.70 +2.3
568,884 - Psyr_0513 0.70 +0.4
568,884 - Psyr_0513 0.70 +0.2
568,884 - Psyr_0513 0.70 -0.9
568,884 - Psyr_0513 0.70 +1.9
568,884 - Psyr_0513 0.70 +0.1
568,884 - Psyr_0513 0.70 +0.4
568,884 - Psyr_0513 0.70 +0.3
568,884 - Psyr_0513 0.70 -1.2
568,887 + Psyr_0513 0.70 -0.1
568,887 + Psyr_0513 0.70 +0.2
568,888 - Psyr_0513 0.70 +0.7
568,888 - Psyr_0513 0.70 -0.2
568,888 - Psyr_0513 0.70 +0.3
568,895 + Psyr_0513 0.71 +0.9
568,944 + Psyr_0513 0.78 -0.1
568,976 - Psyr_0513 0.82 -0.7
569,045 - +0.6
569,063 + +0.3
569,064 - -1.4
569,064 - +0.9
569,064 - -0.8
569,369 + Psyr_0514 0.13 +0.6
569,398 + Psyr_0514 0.15 +0.2
569,398 + Psyr_0514 0.15 -0.7
569,398 + Psyr_0514 0.15 -0.3
569,399 - Psyr_0514 0.15 -0.2
569,596 + Psyr_0514 0.24 +0.3
569,596 + Psyr_0514 0.24 -0.6
569,596 + Psyr_0514 0.24 +0.4
569,596 + Psyr_0514 0.24 -0.2
569,596 + Psyr_0514 0.24 -0.0
569,597 - Psyr_0514 0.24 -0.5
569,597 - Psyr_0514 0.24 +0.1
569,708 + Psyr_0514 0.29 +0.1
569,709 - Psyr_0514 0.29 -0.7
569,709 - Psyr_0514 0.29 +0.0
569,709 - Psyr_0514 0.29 -0.3
569,803 + Psyr_0514 0.33 -0.9
569,876 + Psyr_0514 0.36 -0.2

Or see this region's nucleotide sequence