Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0426 and Psyr_0427 overlap by 4 nucleotides Psyr_0427 and Psyr_0428 overlap by 4 nucleotides Psyr_0428 and Psyr_0429 are separated by 54 nucleotides
Psyr_0426: Psyr_0426 - lipoprotein, putative, at 465,143 to 465,625
_0426
Psyr_0427: Psyr_0427 - conserved hypothetical protein, at 465,622 to 466,356
_0427
Psyr_0428: Psyr_0428 - Monooxygenase, FAD-binding protein, at 466,353 to 467,600
_0428
Psyr_0429: Psyr_0429 - membrane protein, putative, at 467,655 to 470,030
_0429
Position (kb) 466
467
468 Strain fitness (log2 ratio) -2
-1
0
1
2 at 465.614 kb on + strand at 465.758 kb on + strand, within Psyr_0427 at 465.758 kb on + strand, within Psyr_0427 at 465.759 kb on - strand, within Psyr_0427 at 465.759 kb on - strand, within Psyr_0427 at 465.818 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.888 kb on - strand, within Psyr_0427 at 465.918 kb on - strand, within Psyr_0427 at 465.918 kb on - strand, within Psyr_0427 at 466.066 kb on + strand, within Psyr_0427 at 466.287 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.442 kb on - strand at 466.517 kb on + strand, within Psyr_0428 at 466.517 kb on + strand, within Psyr_0428 at 466.518 kb on - strand, within Psyr_0428 at 466.540 kb on + strand, within Psyr_0428 at 466.541 kb on - strand, within Psyr_0428 at 467.140 kb on + strand, within Psyr_0428 at 467.141 kb on - strand, within Psyr_0428 at 467.342 kb on - strand, within Psyr_0428 at 467.342 kb on - strand, within Psyr_0428 at 467.342 kb on - strand, within Psyr_0428 at 467.342 kb on - strand, within Psyr_0428 at 467.342 kb on - strand, within Psyr_0428 at 467.342 kb on - strand, within Psyr_0428 at 467.604 kb on + strand at 467.605 kb on - strand at 467.699 kb on + strand at 467.869 kb on - strand at 467.894 kb on - strand, within Psyr_0429 at 468.066 kb on + strand, within Psyr_0429 at 468.066 kb on + strand, within Psyr_0429 at 468.339 kb on + strand, within Psyr_0429 at 468.339 kb on + strand, within Psyr_0429 at 468.404 kb on - strand, within Psyr_0429 at 468.481 kb on + strand, within Psyr_0429 at 468.481 kb on + strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol% remove 465,614 + -0.1 465,758 + Psyr_0427 0.19 +0.4 465,758 + Psyr_0427 0.19 +1.8 465,759 - Psyr_0427 0.19 +0.2 465,759 - Psyr_0427 0.19 -1.0 465,818 + Psyr_0427 0.27 -0.5 465,887 + Psyr_0427 0.36 +1.0 465,887 + Psyr_0427 0.36 -1.6 465,887 + Psyr_0427 0.36 +1.5 465,887 + Psyr_0427 0.36 +0.1 465,887 + Psyr_0427 0.36 +0.6 465,887 + Psyr_0427 0.36 +1.0 465,887 + Psyr_0427 0.36 +0.0 465,887 + Psyr_0427 0.36 -0.2 465,887 + Psyr_0427 0.36 +2.2 465,887 + Psyr_0427 0.36 -0.3 465,887 + Psyr_0427 0.36 +1.2 465,888 - Psyr_0427 0.36 -0.3 465,918 - Psyr_0427 0.40 -0.7 465,918 - Psyr_0427 0.40 +0.7 466,066 + Psyr_0427 0.60 -1.8 466,287 + -1.1 466,328 + +0.9 466,328 + +1.5 466,328 + -0.7 466,328 + -2.3 466,328 + +0.0 466,328 + +0.5 466,328 + -0.2 466,328 + +0.3 466,329 - -0.7 466,329 - -1.6 466,329 - -0.2 466,329 - -0.2 466,329 - +0.9 466,329 - -0.9 466,329 - +0.5 466,329 - +0.0 466,442 - +1.3 466,517 + Psyr_0428 0.13 -2.0 466,517 + Psyr_0428 0.13 -0.1 466,518 - Psyr_0428 0.13 -2.2 466,540 + Psyr_0428 0.15 -0.4 466,541 - Psyr_0428 0.15 +0.0 467,140 + Psyr_0428 0.63 -0.8 467,141 - Psyr_0428 0.63 -0.2 467,342 - Psyr_0428 0.79 +0.4 467,342 - Psyr_0428 0.79 -1.1 467,342 - Psyr_0428 0.79 -0.4 467,342 - Psyr_0428 0.79 -0.6 467,342 - Psyr_0428 0.79 -1.3 467,342 - Psyr_0428 0.79 +0.0 467,604 + -1.8 467,605 - +0.9 467,699 + +0.9 467,869 - +0.7 467,894 - Psyr_0429 0.10 +0.6 468,066 + Psyr_0429 0.17 +0.2 468,066 + Psyr_0429 0.17 +0.0 468,339 + Psyr_0429 0.29 +0.3 468,339 + Psyr_0429 0.29 +0.4 468,404 - Psyr_0429 0.32 -0.6 468,481 + Psyr_0429 0.35 -0.1 468,481 + Psyr_0429 0.35 -0.3 468,482 - Psyr_0429 0.35 +0.5 468,482 - Psyr_0429 0.35 -0.3 468,482 - Psyr_0429 0.35 -0.8 468,482 - Psyr_0429 0.35 -0.4 468,482 - Psyr_0429 0.35 +0.6 468,482 - Psyr_0429 0.35 +1.0 468,482 - Psyr_0429 0.35 +0.7 468,482 - Psyr_0429 0.35 +0.0
Or see this region's nucleotide sequence