Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0147

Experiment: KB with Dimethyl Sulfoxide 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0146 and Psyr_0147 are separated by 284 nucleotidesPsyr_0147 and Psyr_0148 are separated by 49 nucleotidesPsyr_0148 and Psyr_0149 are separated by 77 nucleotides Psyr_0146: Psyr_0146 - 4-aminobutyrate aminotransferase apoenzyme, at 158,304 to 159,608 _0146 Psyr_0147: Psyr_0147 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 159,893 to 160,822 _0147 Psyr_0148: Psyr_0148 - hypothetical protein, at 160,872 to 161,111 _0148 Psyr_0149: Psyr_0149 - succinate semialdehyde dehydrogenase, at 161,189 to 162,646 _0149 Position (kb) 159 160 161Strain fitness (log2 ratio) -2 -1 0 1 2 3at 159.127 kb on + strand, within Psyr_0146at 159.127 kb on + strand, within Psyr_0146at 159.128 kb on - strand, within Psyr_0146at 159.128 kb on - strand, within Psyr_0146at 159.167 kb on + strand, within Psyr_0146at 159.167 kb on + strand, within Psyr_0146at 159.341 kb on - strand, within Psyr_0146at 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.614 kb on + strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.615 kb on - strandat 159.686 kb on + strandat 159.686 kb on + strandat 159.686 kb on + strandat 159.686 kb on + strandat 159.908 kb on + strandat 159.908 kb on + strandat 160.020 kb on - strand, within Psyr_0147at 160.020 kb on - strand, within Psyr_0147at 160.333 kb on + strand, within Psyr_0147at 160.333 kb on + strand, within Psyr_0147at 160.334 kb on - strand, within Psyr_0147at 160.334 kb on - strand, within Psyr_0147at 160.415 kb on + strand, within Psyr_0147at 160.416 kb on - strand, within Psyr_0147at 160.416 kb on - strand, within Psyr_0147at 160.416 kb on - strand, within Psyr_0147at 160.556 kb on - strand, within Psyr_0147at 160.556 kb on - strand, within Psyr_0147at 160.817 kb on + strandat 160.820 kb on + strandat 160.821 kb on - strandat 160.821 kb on - strandat 160.821 kb on - strandat 160.821 kb on - strandat 160.821 kb on - strandat 160.857 kb on + strandat 160.857 kb on + strandat 160.857 kb on + strandat 160.857 kb on + strandat 160.858 kb on - strandat 161.013 kb on + strand, within Psyr_0148at 161.013 kb on + strand, within Psyr_0148at 161.013 kb on + strand, within Psyr_0148at 161.013 kb on + strand, within Psyr_0148at 161.013 kb on + strand, within Psyr_0148at 161.014 kb on - strand, within Psyr_0148at 161.067 kb on + strand, within Psyr_0148at 161.067 kb on + strand, within Psyr_0148at 161.128 kb on + strandat 161.190 kb on + strandat 161.190 kb on + strandat 161.191 kb on - strandat 161.227 kb on - strandat 161.227 kb on - strandat 161.388 kb on + strand, within Psyr_0149at 161.388 kb on + strand, within Psyr_0149at 161.389 kb on - strand, within Psyr_0149at 161.389 kb on - strand, within Psyr_0149at 161.389 kb on - strand, within Psyr_0149at 161.389 kb on - strand, within Psyr_0149at 161.392 kb on - strand, within Psyr_0149at 161.392 kb on - strand, within Psyr_0149at 161.526 kb on - strand, within Psyr_0149at 161.733 kb on + strand, within Psyr_0149at 161.734 kb on - strand, within Psyr_0149at 161.734 kb on - strand, within Psyr_0149

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol%
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159,127 + Psyr_0146 0.63 -0.0
159,127 + Psyr_0146 0.63 -0.8
159,128 - Psyr_0146 0.63 +0.9
159,128 - Psyr_0146 0.63 +0.3
159,167 + Psyr_0146 0.66 +1.6
159,167 + Psyr_0146 0.66 -0.0
159,341 - Psyr_0146 0.79 +0.1
159,614 + -0.2
159,614 + +0.2
159,614 + +0.2
159,614 + +1.6
159,614 + -1.2
159,614 + +0.2
159,614 + +0.6
159,614 + +0.5
159,614 + +0.9
159,614 + -0.3
159,614 + +0.8
159,614 + +0.1
159,614 + +1.6
159,614 + -0.9
159,614 + +0.4
159,614 + +0.9
159,615 - -1.4
159,615 - +2.4
159,615 - -0.1
159,615 - +0.1
159,615 - -0.6
159,615 - +1.4
159,615 - +0.5
159,615 - +0.4
159,615 - +0.3
159,615 - -1.4
159,615 - +0.1
159,615 - -1.5
159,615 - +0.7
159,615 - +0.1
159,686 + +1.9
159,686 + -0.3
159,686 + -1.2
159,686 + -0.3
159,908 + -0.3
159,908 + +0.3
160,020 - Psyr_0147 0.14 +0.7
160,020 - Psyr_0147 0.14 +0.6
160,333 + Psyr_0147 0.47 +1.8
160,333 + Psyr_0147 0.47 +0.1
160,334 - Psyr_0147 0.47 -0.4
160,334 - Psyr_0147 0.47 +0.8
160,415 + Psyr_0147 0.56 -0.1
160,416 - Psyr_0147 0.56 +0.1
160,416 - Psyr_0147 0.56 -0.7
160,416 - Psyr_0147 0.56 +2.0
160,556 - Psyr_0147 0.71 -1.1
160,556 - Psyr_0147 0.71 -0.2
160,817 + +0.1
160,820 + +0.1
160,821 - +0.4
160,821 - +1.1
160,821 - -2.3
160,821 - +0.7
160,821 - +1.6
160,857 + +0.1
160,857 + -0.2
160,857 + +1.3
160,857 + -0.1
160,858 - +1.0
161,013 + Psyr_0148 0.59 +0.8
161,013 + Psyr_0148 0.59 +1.0
161,013 + Psyr_0148 0.59 +3.4
161,013 + Psyr_0148 0.59 +0.9
161,013 + Psyr_0148 0.59 -0.7
161,014 - Psyr_0148 0.59 +0.5
161,067 + Psyr_0148 0.81 -0.0
161,067 + Psyr_0148 0.81 +0.1
161,128 + +1.3
161,190 + +0.2
161,190 + -0.9
161,191 - -0.2
161,227 - +0.1
161,227 - +0.5
161,388 + Psyr_0149 0.14 +0.8
161,388 + Psyr_0149 0.14 +0.1
161,389 - Psyr_0149 0.14 +1.9
161,389 - Psyr_0149 0.14 +0.5
161,389 - Psyr_0149 0.14 -0.9
161,389 - Psyr_0149 0.14 +0.2
161,392 - Psyr_0149 0.14 -0.9
161,392 - Psyr_0149 0.14 +0.8
161,526 - Psyr_0149 0.23 +0.5
161,733 + Psyr_0149 0.37 +0.2
161,734 - Psyr_0149 0.37 -1.2
161,734 - Psyr_0149 0.37 -0.8

Or see this region's nucleotide sequence