Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0073

Experiment: KB with Dimethyl Sulfoxide 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0072 and Psyr_0073 are separated by 158 nucleotidesPsyr_0073 and Psyr_0074 are separated by 12 nucleotides Psyr_0072: Psyr_0072 - transcriptional regulator, LysR family, at 75,159 to 76,079 _0072 Psyr_0073: Psyr_0073 - Multi antimicrobial extrusion protein MatE, at 76,238 to 77,620 _0073 Psyr_0074: Psyr_0074 - diguanylate cyclase/phosphodiesterase, at 77,633 to 79,297 _0074 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 75.271 kb on + strand, within Psyr_0072at 75.271 kb on + strand, within Psyr_0072at 75.271 kb on + strand, within Psyr_0072at 75.272 kb on - strand, within Psyr_0072at 75.272 kb on - strand, within Psyr_0072at 75.272 kb on - strand, within Psyr_0072at 75.272 kb on - strand, within Psyr_0072at 75.272 kb on - strand, within Psyr_0072at 75.275 kb on - strand, within Psyr_0072at 75.275 kb on - strand, within Psyr_0072at 75.275 kb on - strand, within Psyr_0072at 75.275 kb on - strand, within Psyr_0072at 75.639 kb on + strand, within Psyr_0072at 75.639 kb on + strand, within Psyr_0072at 75.640 kb on - strand, within Psyr_0072at 75.803 kb on + strand, within Psyr_0072at 75.803 kb on + strand, within Psyr_0072at 75.803 kb on + strand, within Psyr_0072at 75.803 kb on + strand, within Psyr_0072at 75.804 kb on - strand, within Psyr_0072at 75.804 kb on - strand, within Psyr_0072at 75.905 kb on + strand, within Psyr_0072at 75.906 kb on - strand, within Psyr_0072at 75.959 kb on + strand, within Psyr_0072at 76.047 kb on + strandat 76.048 kb on - strandat 76.048 kb on - strandat 76.114 kb on + strandat 76.114 kb on + strandat 76.140 kb on + strandat 76.163 kb on - strandat 76.197 kb on + strandat 76.197 kb on + strandat 76.198 kb on - strandat 76.198 kb on - strandat 76.400 kb on + strand, within Psyr_0073at 76.400 kb on + strand, within Psyr_0073at 76.400 kb on + strand, within Psyr_0073at 76.400 kb on + strand, within Psyr_0073at 76.400 kb on + strand, within Psyr_0073at 76.401 kb on - strand, within Psyr_0073at 76.401 kb on - strand, within Psyr_0073at 76.401 kb on - strand, within Psyr_0073at 76.401 kb on - strand, within Psyr_0073at 76.401 kb on - strand, within Psyr_0073at 76.613 kb on - strand, within Psyr_0073at 76.613 kb on - strand, within Psyr_0073at 76.764 kb on - strand, within Psyr_0073at 76.871 kb on - strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 77.145 kb on + strand, within Psyr_0073at 77.145 kb on - strand, within Psyr_0073at 77.307 kb on + strand, within Psyr_0073at 77.552 kb on + strandat 77.552 kb on + strandat 77.552 kb on + strandat 77.552 kb on + strandat 77.553 kb on - strandat 77.553 kb on - strandat 77.553 kb on - strandat 77.650 kb on + strandat 77.650 kb on + strandat 77.679 kb on + strandat 77.679 kb on + strandat 77.679 kb on + strandat 77.679 kb on + strandat 77.679 kb on + strandat 77.679 kb on + strandat 77.679 kb on + strandat 77.680 kb on - strandat 77.680 kb on - strandat 77.680 kb on - strandat 77.722 kb on - strandat 77.722 kb on - strandat 77.745 kb on + strandat 77.746 kb on - strandat 77.746 kb on - strandat 78.335 kb on - strand, within Psyr_0074at 78.468 kb on + strand, within Psyr_0074at 78.468 kb on + strand, within Psyr_0074at 78.468 kb on + strand, within Psyr_0074at 78.468 kb on + strand, within Psyr_0074at 78.468 kb on + strand, within Psyr_0074at 78.468 kb on + strand, within Psyr_0074at 78.468 kb on + strand, within Psyr_0074at 78.468 kb on + strand, within Psyr_0074at 78.468 kb on + strand, within Psyr_0074at 78.468 kb on + strand, within Psyr_0074at 78.469 kb on - strand, within Psyr_0074at 78.469 kb on - strand, within Psyr_0074at 78.469 kb on - strand, within Psyr_0074at 78.469 kb on - strand, within Psyr_0074at 78.469 kb on - strand, within Psyr_0074at 78.469 kb on - strand, within Psyr_0074at 78.508 kb on + strand, within Psyr_0074at 78.508 kb on + strand, within Psyr_0074at 78.509 kb on - strand, within Psyr_0074at 78.509 kb on - strand, within Psyr_0074

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1 vol%
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75,271 + Psyr_0072 0.12 +0.4
75,271 + Psyr_0072 0.12 -1.1
75,271 + Psyr_0072 0.12 -0.6
75,272 - Psyr_0072 0.12 +0.1
75,272 - Psyr_0072 0.12 -0.1
75,272 - Psyr_0072 0.12 +0.1
75,272 - Psyr_0072 0.12 -0.6
75,272 - Psyr_0072 0.12 -0.9
75,275 - Psyr_0072 0.13 -0.4
75,275 - Psyr_0072 0.13 -2.2
75,275 - Psyr_0072 0.13 +0.7
75,275 - Psyr_0072 0.13 -0.2
75,639 + Psyr_0072 0.52 -0.8
75,639 + Psyr_0072 0.52 +0.6
75,640 - Psyr_0072 0.52 -0.6
75,803 + Psyr_0072 0.70 -2.1
75,803 + Psyr_0072 0.70 -0.6
75,803 + Psyr_0072 0.70 -0.2
75,803 + Psyr_0072 0.70 +0.4
75,804 - Psyr_0072 0.70 +1.2
75,804 - Psyr_0072 0.70 -1.4
75,905 + Psyr_0072 0.81 +0.4
75,906 - Psyr_0072 0.81 -0.9
75,959 + Psyr_0072 0.87 +0.1
76,047 + +1.2
76,048 - +1.3
76,048 - +0.4
76,114 + +0.2
76,114 + +0.1
76,140 + -0.4
76,163 - +0.4
76,197 + +0.4
76,197 + +0.8
76,198 - +0.1
76,198 - +0.6
76,400 + Psyr_0073 0.12 -1.4
76,400 + Psyr_0073 0.12 +0.9
76,400 + Psyr_0073 0.12 +0.0
76,400 + Psyr_0073 0.12 +0.1
76,400 + Psyr_0073 0.12 -0.1
76,401 - Psyr_0073 0.12 -0.4
76,401 - Psyr_0073 0.12 +0.1
76,401 - Psyr_0073 0.12 -0.9
76,401 - Psyr_0073 0.12 -0.1
76,401 - Psyr_0073 0.12 -0.7
76,613 - Psyr_0073 0.27 -0.4
76,613 - Psyr_0073 0.27 -0.7
76,764 - Psyr_0073 0.38 -0.8
76,871 - Psyr_0073 0.46 +0.4
76,982 + Psyr_0073 0.54 +2.1
76,982 + Psyr_0073 0.54 +1.1
76,982 + Psyr_0073 0.54 -0.2
76,982 + Psyr_0073 0.54 +0.5
76,982 + Psyr_0073 0.54 -0.6
76,982 + Psyr_0073 0.54 -0.8
76,982 + Psyr_0073 0.54 -0.5
76,982 + Psyr_0073 0.54 +0.4
76,983 - Psyr_0073 0.54 +0.8
76,983 - Psyr_0073 0.54 -0.1
76,983 - Psyr_0073 0.54 -0.4
76,983 - Psyr_0073 0.54 +0.6
76,983 - Psyr_0073 0.54 -0.5
76,983 - Psyr_0073 0.54 +0.4
76,983 - Psyr_0073 0.54 +0.2
76,983 - Psyr_0073 0.54 -1.4
76,983 - Psyr_0073 0.54 -0.4
76,983 - Psyr_0073 0.54 -1.2
76,983 - Psyr_0073 0.54 +0.1
77,145 + Psyr_0073 0.66 -0.5
77,145 - Psyr_0073 0.66 -1.1
77,307 + Psyr_0073 0.77 +0.2
77,552 + -0.5
77,552 + +0.6
77,552 + +1.2
77,552 + +0.1
77,553 - -0.5
77,553 - +0.7
77,553 - -0.8
77,650 + +0.4
77,650 + +0.6
77,679 + -0.4
77,679 + +0.6
77,679 + -2.2
77,679 + -0.2
77,679 + +1.8
77,679 + -0.4
77,679 + +0.5
77,680 - -0.8
77,680 - -1.8
77,680 - -0.3
77,722 - -0.3
77,722 - -0.2
77,745 + -0.0
77,746 - -1.2
77,746 - +0.5
78,335 - Psyr_0074 0.42 -0.3
78,468 + Psyr_0074 0.50 +0.5
78,468 + Psyr_0074 0.50 +1.3
78,468 + Psyr_0074 0.50 +1.1
78,468 + Psyr_0074 0.50 +0.6
78,468 + Psyr_0074 0.50 -0.2
78,468 + Psyr_0074 0.50 +0.1
78,468 + Psyr_0074 0.50 +0.1
78,468 + Psyr_0074 0.50 +0.8
78,468 + Psyr_0074 0.50 +0.7
78,468 + Psyr_0074 0.50 +1.1
78,469 - Psyr_0074 0.50 -2.1
78,469 - Psyr_0074 0.50 +1.2
78,469 - Psyr_0074 0.50 +0.3
78,469 - Psyr_0074 0.50 +0.9
78,469 - Psyr_0074 0.50 -0.4
78,469 - Psyr_0074 0.50 +0.3
78,508 + Psyr_0074 0.53 -0.1
78,508 + Psyr_0074 0.53 -0.9
78,509 - Psyr_0074 0.53 -0.3
78,509 - Psyr_0074 0.53 -0.7

Or see this region's nucleotide sequence