Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0070
Experiment: KB with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Dimethyl Sulfoxide 1 vol% |
---|---|---|---|---|---|
remove | |||||
71,294 | + | Psyr_0069 | 0.56 | +1.1 | |
71,294 | + | Psyr_0069 | 0.56 | +1.1 | |
71,294 | + | Psyr_0069 | 0.56 | +1.1 | |
71,294 | + | Psyr_0069 | 0.56 | -0.1 | |
71,294 | + | Psyr_0069 | 0.56 | -0.0 | |
71,295 | - | Psyr_0069 | 0.56 | +0.1 | |
71,938 | - | -1.0 | |||
71,943 | - | -0.6 | |||
71,970 | + | +0.5 | |||
71,970 | + | -0.3 | |||
72,055 | - | -0.5 | |||
72,103 | + | +0.9 | |||
72,103 | + | -0.3 | |||
72,104 | - | -0.6 | |||
72,104 | - | -1.2 | |||
72,111 | + | -0.6 | |||
72,111 | + | -0.4 | |||
72,112 | - | -0.1 | |||
72,114 | + | +0.1 | |||
72,114 | + | -0.6 | |||
72,114 | + | +0.9 | |||
72,114 | + | +0.9 | |||
72,115 | - | +0.2 | |||
72,115 | - | -1.4 | |||
72,115 | - | -1.1 | |||
72,115 | - | +0.9 | |||
72,115 | - | -0.2 | |||
72,123 | - | -0.3 | |||
72,162 | + | +0.5 | |||
72,162 | + | -0.8 | |||
72,163 | - | -1.9 | |||
72,175 | + | -0.5 | |||
72,186 | + | -1.8 | |||
72,243 | + | -0.6 | |||
72,262 | - | -1.6 | |||
72,262 | - | -0.9 | |||
72,320 | - | Psyr_0070 | 0.11 | -0.5 | |
72,393 | + | Psyr_0070 | 0.20 | -1.4 | |
72,917 | + | Psyr_0070 | 0.83 | -0.5 | |
73,271 | + | Psyr_0071 | 0.14 | -0.4 | |
73,271 | + | Psyr_0071 | 0.14 | +0.5 | |
73,271 | + | Psyr_0071 | 0.14 | +0.8 | |
73,271 | + | Psyr_0071 | 0.14 | +0.9 | |
73,271 | + | Psyr_0071 | 0.14 | -0.3 | |
73,271 | + | Psyr_0071 | 0.14 | -0.1 | |
73,272 | - | Psyr_0071 | 0.14 | -0.9 | |
73,272 | - | Psyr_0071 | 0.14 | +1.1 | |
73,272 | - | Psyr_0071 | 0.14 | +0.5 | |
73,272 | - | Psyr_0071 | 0.14 | -0.4 | |
73,914 | + | Psyr_0071 | 0.46 | +0.5 | |
73,953 | + | Psyr_0071 | 0.48 | +0.7 | |
73,953 | + | Psyr_0071 | 0.48 | +0.2 |
Or see this region's nucleotide sequence