Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20815 and HSERO_RS20820 are separated by 61 nucleotides HSERO_RS20820 and HSERO_RS20825 are separated by 1 nucleotides HSERO_RS20825 and HSERO_RS20830 are separated by 131 nucleotides
HSERO_RS20815: HSERO_RS20815 - tRNA methyltransferase, at 4,765,067 to 4,765,549
_RS20815
HSERO_RS20820: HSERO_RS20820 - ABC transporter ATP-binding protein, at 4,765,611 to 4,766,405
_RS20820
HSERO_RS20825: HSERO_RS20825 - ABC transporter permease, at 4,766,407 to 4,767,300
_RS20825
HSERO_RS20830: HSERO_RS20830 - ABC transporter substrate-binding protein, at 4,767,432 to 4,768,403
_RS20830
Position (kb) 4766
4767
4768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4765.483 kb on + strand, within HSERO_RS20815 at 4765.515 kb on - strand at 4765.529 kb on + strand at 4765.685 kb on - strand at 4765.999 kb on + strand, within HSERO_RS20820 at 4766.262 kb on - strand at 4766.771 kb on + strand, within HSERO_RS20825 at 4767.007 kb on - strand, within HSERO_RS20825 at 4767.100 kb on - strand, within HSERO_RS20825 at 4767.172 kb on - strand, within HSERO_RS20825 at 4767.287 kb on + strand at 4767.431 kb on - strand at 4767.694 kb on + strand at 4767.760 kb on - strand, within HSERO_RS20830 at 4767.830 kb on + strand, within HSERO_RS20830 at 4767.939 kb on - strand, within HSERO_RS20830 at 4767.957 kb on - strand at 4768.246 kb on + strand, within HSERO_RS20830
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 4,765,483 + HSERO_RS20815 0.86 +0.3 4,765,515 - +0.7 4,765,529 + -1.6 4,765,685 - -3.0 4,765,999 + HSERO_RS20820 0.49 -1.5 4,766,262 - -0.9 4,766,771 + HSERO_RS20825 0.41 -0.5 4,767,007 - HSERO_RS20825 0.67 -1.3 4,767,100 - HSERO_RS20825 0.78 -1.4 4,767,172 - HSERO_RS20825 0.86 -2.1 4,767,287 + -0.1 4,767,431 - +0.0 4,767,694 + +4.0 4,767,760 - HSERO_RS20830 0.34 -0.1 4,767,830 + HSERO_RS20830 0.41 -0.2 4,767,939 - HSERO_RS20830 0.52 -0.2 4,767,957 - -0.5 4,768,246 + HSERO_RS20830 0.84 -0.9
Or see this region's nucleotide sequence