Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19130 and HSERO_RS19135 overlap by 4 nucleotides HSERO_RS19135 and HSERO_RS19140 are separated by 330 nucleotides HSERO_RS19140 and HSERO_RS19145 are separated by 215 nucleotides
HSERO_RS19130: HSERO_RS19130 - geranyl transferase, at 4,390,150 to 4,391,097
_RS19130
HSERO_RS19135: HSERO_RS19135 - exodeoxyribonuclease, at 4,391,094 to 4,391,321
_RS19135
HSERO_RS19140: HSERO_RS19140 - Rieske (2Fe-2S) protein, at 4,391,652 to 4,392,776
_RS19140
HSERO_RS19145: HSERO_RS19145 - drug/metabolite transporter (DMT) superfamily permease, at 4,392,992 to 4,393,909
_RS19145
Position (kb) 4391
4392
4393 Strain fitness (log2 ratio) -1
0
1 at 4391.139 kb on - strand, within HSERO_RS19135 at 4391.370 kb on - strand at 4391.417 kb on + strand at 4391.483 kb on - strand at 4391.553 kb on + strand at 4391.563 kb on - strand at 4391.565 kb on + strand at 4391.700 kb on + strand at 4391.732 kb on - strand at 4392.035 kb on + strand, within HSERO_RS19140 at 4392.251 kb on - strand, within HSERO_RS19140 at 4392.310 kb on + strand, within HSERO_RS19140 at 4393.011 kb on - strand at 4393.192 kb on - strand, within HSERO_RS19145 at 4393.230 kb on - strand at 4393.372 kb on - strand, within HSERO_RS19145 at 4393.475 kb on - strand, within HSERO_RS19145 at 4393.481 kb on - strand, within HSERO_RS19145 at 4393.561 kb on + strand, within HSERO_RS19145 at 4393.702 kb on + strand, within HSERO_RS19145
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 4,391,139 - HSERO_RS19135 0.20 -0.5 4,391,370 - +0.7 4,391,417 + +1.4 4,391,483 - +0.9 4,391,553 + +0.2 4,391,563 - +0.8 4,391,565 + +0.1 4,391,700 + -0.6 4,391,732 - -0.0 4,392,035 + HSERO_RS19140 0.34 -0.8 4,392,251 - HSERO_RS19140 0.53 -1.2 4,392,310 + HSERO_RS19140 0.58 +0.1 4,393,011 - +0.5 4,393,192 - HSERO_RS19145 0.22 -1.6 4,393,230 - +1.4 4,393,372 - HSERO_RS19145 0.41 -0.6 4,393,475 - HSERO_RS19145 0.53 -1.6 4,393,481 - HSERO_RS19145 0.53 -1.0 4,393,561 + HSERO_RS19145 0.62 -1.1 4,393,702 + HSERO_RS19145 0.77 +1.4
Or see this region's nucleotide sequence