Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06950

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS06945 and HSERO_RS06950 are separated by 164 nucleotidesHSERO_RS06950 and HSERO_RS06955 are separated by 116 nucleotides HSERO_RS06945: HSERO_RS06945 - ATP-dependent metalloprotease, at 1,580,671 to 1,582,560 _RS06945 HSERO_RS06950: HSERO_RS06950 - dihydropteroate synthase, at 1,582,725 to 1,583,573 _RS06950 HSERO_RS06955: HSERO_RS06955 - phosphoglucosamine mutase, at 1,583,690 to 1,585,024 _RS06955 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -1 0 1at 1582.591 kb on + strandat 1583.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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1,582,591 + -1.5
1,583,649 - +0.4

Or see this region's nucleotide sequence