Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01010

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01005 and HSERO_RS01010 are separated by 6 nucleotidesHSERO_RS01010 and HSERO_RS01015 are separated by 30 nucleotides HSERO_RS01005: HSERO_RS01005 - hypothetical protein, at 215,926 to 216,300 _RS01005 HSERO_RS01010: HSERO_RS01010 - tail fiber protein, at 216,307 to 217,431 _RS01010 HSERO_RS01015: HSERO_RS01015 - hypothetical protein, at 217,462 to 218,649 _RS01015 Position (kb) 216 217 218Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 215.408 kb on + strandat 215.518 kb on + strandat 215.549 kb on + strandat 215.726 kb on - strandat 215.750 kb on - strandat 215.795 kb on + strandat 215.939 kb on - strandat 215.943 kb on - strandat 215.963 kb on + strandat 216.043 kb on - strand, within HSERO_RS01005at 216.304 kb on + strandat 216.305 kb on + strandat 216.412 kb on - strandat 216.413 kb on + strandat 216.597 kb on + strand, within HSERO_RS01010at 216.605 kb on - strand, within HSERO_RS01010at 216.656 kb on + strand, within HSERO_RS01010at 216.674 kb on - strand, within HSERO_RS01010at 216.690 kb on - strand, within HSERO_RS01010at 216.719 kb on - strand, within HSERO_RS01010at 216.789 kb on - strand, within HSERO_RS01010at 216.800 kb on + strand, within HSERO_RS01010at 216.818 kb on - strand, within HSERO_RS01010at 216.954 kb on - strand, within HSERO_RS01010at 217.059 kb on - strand, within HSERO_RS01010at 217.208 kb on - strand, within HSERO_RS01010at 217.234 kb on - strand, within HSERO_RS01010at 217.324 kb on - strandat 217.450 kb on + strandat 217.481 kb on - strandat 217.518 kb on + strandat 217.564 kb on - strandat 217.625 kb on + strand, within HSERO_RS01015at 217.736 kb on + strandat 217.831 kb on - strand, within HSERO_RS01015at 217.836 kb on - strand, within HSERO_RS01015at 217.941 kb on - strand, within HSERO_RS01015at 217.974 kb on + strand, within HSERO_RS01015at 218.115 kb on - strand, within HSERO_RS01015at 218.130 kb on + strand, within HSERO_RS01015at 218.198 kb on + strand, within HSERO_RS01015at 218.206 kb on - strand, within HSERO_RS01015at 218.206 kb on - strand, within HSERO_RS01015at 218.206 kb on - strand, within HSERO_RS01015at 218.282 kb on + strand, within HSERO_RS01015at 218.381 kb on + strand, within HSERO_RS01015

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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215,408 + +0.8
215,518 + -0.6
215,549 + +0.9
215,726 - -0.5
215,750 - +3.8
215,795 + +0.5
215,939 - -1.6
215,943 - -1.4
215,963 + -0.9
216,043 - HSERO_RS01005 0.31 +1.0
216,304 + -0.4
216,305 + -3.0
216,412 - +0.3
216,413 + -0.3
216,597 + HSERO_RS01010 0.26 -0.3
216,605 - HSERO_RS01010 0.26 +0.1
216,656 + HSERO_RS01010 0.31 +1.9
216,674 - HSERO_RS01010 0.33 -0.6
216,690 - HSERO_RS01010 0.34 +0.0
216,719 - HSERO_RS01010 0.37 -1.6
216,789 - HSERO_RS01010 0.43 +0.4
216,800 + HSERO_RS01010 0.44 -0.1
216,818 - HSERO_RS01010 0.45 +0.4
216,954 - HSERO_RS01010 0.58 +1.4
217,059 - HSERO_RS01010 0.67 +1.2
217,208 - HSERO_RS01010 0.80 +1.4
217,234 - HSERO_RS01010 0.82 -0.4
217,324 - +0.1
217,450 + -0.4
217,481 - -0.7
217,518 + -0.7
217,564 - -0.3
217,625 + HSERO_RS01015 0.14 +0.6
217,736 + +0.0
217,831 - HSERO_RS01015 0.31 -1.6
217,836 - HSERO_RS01015 0.31 -1.4
217,941 - HSERO_RS01015 0.40 +0.0
217,974 + HSERO_RS01015 0.43 -0.0
218,115 - HSERO_RS01015 0.55 +0.7
218,130 + HSERO_RS01015 0.56 +0.0
218,198 + HSERO_RS01015 0.62 -0.1
218,206 - HSERO_RS01015 0.63 -3.4
218,206 - HSERO_RS01015 0.63 -0.5
218,206 - HSERO_RS01015 0.63 -0.4
218,282 + HSERO_RS01015 0.69 +0.6
218,381 + HSERO_RS01015 0.77 +0.2

Or see this region's nucleotide sequence