Experiment: Polygalacturonic ultrapure 5mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00405 and HMPREF1058_RS00400 are separated by 97 nucleotides HMPREF1058_RS00400 and HMPREF1058_RS00395 overlap by 4 nucleotides HMPREF1058_RS00395 and HMPREF1058_RS00390 are separated by 14 nucleotides
HMPREF1058_RS00405: HMPREF1058_RS00405 - M28 family peptidase, at 80,004 to 81,497
_RS00405
HMPREF1058_RS00400: HMPREF1058_RS00400 - GntR family transcriptional regulator, at 81,595 to 81,960
_RS00400
HMPREF1058_RS00395: HMPREF1058_RS00395 - hypothetical protein, at 81,957 to 82,850
_RS00395
HMPREF1058_RS00390: HMPREF1058_RS00390 - ATP-binding cassette domain-containing protein, at 82,865 to 83,707
_RS00390
Position (kb) 81
82 Strain fitness (log2 ratio) -2
-1
0
1 at 80.599 kb on - strand, within HMPREF1058_RS00405 at 80.606 kb on + strand, within HMPREF1058_RS00405 at 80.606 kb on + strand, within HMPREF1058_RS00405 at 80.607 kb on - strand, within HMPREF1058_RS00405 at 80.664 kb on + strand, within HMPREF1058_RS00405 at 80.665 kb on - strand, within HMPREF1058_RS00405 at 80.665 kb on - strand, within HMPREF1058_RS00405 at 80.769 kb on + strand, within HMPREF1058_RS00405 at 80.770 kb on - strand, within HMPREF1058_RS00405 at 80.794 kb on - strand, within HMPREF1058_RS00405 at 80.859 kb on + strand, within HMPREF1058_RS00405 at 80.859 kb on + strand, within HMPREF1058_RS00405 at 80.861 kb on + strand, within HMPREF1058_RS00405 at 80.915 kb on + strand, within HMPREF1058_RS00405 at 80.920 kb on + strand, within HMPREF1058_RS00405 at 80.920 kb on + strand, within HMPREF1058_RS00405 at 80.921 kb on - strand, within HMPREF1058_RS00405 at 80.921 kb on - strand, within HMPREF1058_RS00405 at 80.921 kb on - strand, within HMPREF1058_RS00405 at 80.931 kb on + strand, within HMPREF1058_RS00405 at 80.932 kb on - strand, within HMPREF1058_RS00405 at 80.932 kb on - strand, within HMPREF1058_RS00405 at 80.935 kb on + strand, within HMPREF1058_RS00405 at 81.084 kb on - strand, within HMPREF1058_RS00405 at 81.123 kb on - strand, within HMPREF1058_RS00405 at 81.126 kb on + strand, within HMPREF1058_RS00405 at 81.127 kb on - strand, within HMPREF1058_RS00405 at 81.166 kb on + strand, within HMPREF1058_RS00405 at 81.196 kb on + strand at 81.197 kb on - strand, within HMPREF1058_RS00405 at 81.209 kb on - strand, within HMPREF1058_RS00405 at 81.209 kb on - strand, within HMPREF1058_RS00405 at 81.209 kb on - strand, within HMPREF1058_RS00405 at 81.219 kb on + strand, within HMPREF1058_RS00405 at 81.220 kb on - strand, within HMPREF1058_RS00405 at 81.225 kb on + strand, within HMPREF1058_RS00405 at 81.227 kb on + strand, within HMPREF1058_RS00405 at 81.227 kb on + strand, within HMPREF1058_RS00405 at 81.227 kb on + strand, within HMPREF1058_RS00405 at 81.251 kb on - strand, within HMPREF1058_RS00405 at 81.251 kb on - strand, within HMPREF1058_RS00405 at 81.269 kb on + strand, within HMPREF1058_RS00405 at 81.269 kb on + strand, within HMPREF1058_RS00405 at 81.269 kb on + strand, within HMPREF1058_RS00405 at 81.273 kb on + strand, within HMPREF1058_RS00405 at 81.273 kb on + strand, within HMPREF1058_RS00405 at 81.273 kb on + strand, within HMPREF1058_RS00405 at 81.273 kb on + strand at 81.274 kb on - strand, within HMPREF1058_RS00405 at 81.274 kb on - strand, within HMPREF1058_RS00405 at 81.277 kb on + strand, within HMPREF1058_RS00405 at 81.277 kb on + strand, within HMPREF1058_RS00405 at 81.277 kb on + strand, within HMPREF1058_RS00405 at 81.278 kb on - strand, within HMPREF1058_RS00405 at 81.278 kb on - strand, within HMPREF1058_RS00405 at 81.365 kb on + strand at 81.365 kb on + strand at 81.366 kb on - strand at 81.366 kb on - strand at 81.368 kb on - strand at 81.368 kb on - strand at 81.393 kb on + strand at 81.414 kb on - strand at 81.414 kb on - strand at 81.425 kb on + strand at 81.505 kb on + strand at 81.563 kb on + strand at 81.563 kb on + strand at 81.564 kb on - strand at 81.564 kb on - strand at 81.621 kb on - strand at 81.703 kb on - strand, within HMPREF1058_RS00400 at 81.777 kb on + strand, within HMPREF1058_RS00400 at 81.797 kb on + strand, within HMPREF1058_RS00400 at 81.798 kb on - strand, within HMPREF1058_RS00400 at 81.798 kb on - strand, within HMPREF1058_RS00400 at 81.804 kb on - strand, within HMPREF1058_RS00400 at 81.883 kb on - strand, within HMPREF1058_RS00400 at 81.884 kb on + strand, within HMPREF1058_RS00400 at 81.885 kb on - strand, within HMPREF1058_RS00400 at 81.923 kb on - strand, within HMPREF1058_RS00400 at 81.933 kb on - strand at 81.961 kb on - strand at 82.077 kb on + strand, within HMPREF1058_RS00395 at 82.121 kb on + strand, within HMPREF1058_RS00395 at 82.121 kb on + strand, within HMPREF1058_RS00395 at 82.150 kb on - strand, within HMPREF1058_RS00395 at 82.155 kb on - strand, within HMPREF1058_RS00395 at 82.155 kb on - strand, within HMPREF1058_RS00395 at 82.159 kb on - strand, within HMPREF1058_RS00395 at 82.181 kb on + strand, within HMPREF1058_RS00395 at 82.182 kb on - strand, within HMPREF1058_RS00395 at 82.187 kb on + strand, within HMPREF1058_RS00395 at 82.187 kb on + strand, within HMPREF1058_RS00395 at 82.238 kb on + strand, within HMPREF1058_RS00395 at 82.238 kb on + strand, within HMPREF1058_RS00395 at 82.239 kb on - strand, within HMPREF1058_RS00395 at 82.246 kb on - strand, within HMPREF1058_RS00395 at 82.250 kb on + strand, within HMPREF1058_RS00395 at 82.250 kb on + strand, within HMPREF1058_RS00395 at 82.250 kb on + strand, within HMPREF1058_RS00395 at 82.253 kb on - strand, within HMPREF1058_RS00395 at 82.253 kb on - strand, within HMPREF1058_RS00395 at 82.345 kb on + strand, within HMPREF1058_RS00395 at 82.345 kb on + strand, within HMPREF1058_RS00395 at 82.347 kb on + strand, within HMPREF1058_RS00395 at 82.348 kb on - strand, within HMPREF1058_RS00395 at 82.348 kb on - strand, within HMPREF1058_RS00395 at 82.385 kb on + strand, within HMPREF1058_RS00395 at 82.386 kb on - strand, within HMPREF1058_RS00395 at 82.389 kb on + strand, within HMPREF1058_RS00395 at 82.390 kb on - strand, within HMPREF1058_RS00395 at 82.417 kb on - strand, within HMPREF1058_RS00395 at 82.417 kb on - strand, within HMPREF1058_RS00395 at 82.506 kb on + strand, within HMPREF1058_RS00395 at 82.632 kb on - strand, within HMPREF1058_RS00395 at 82.664 kb on - strand, within HMPREF1058_RS00395 at 82.692 kb on - strand, within HMPREF1058_RS00395 at 82.694 kb on - strand, within HMPREF1058_RS00395 at 82.748 kb on - strand, within HMPREF1058_RS00395 at 82.861 kb on + strand at 82.861 kb on + strand at 82.867 kb on - strand at 82.867 kb on - strand at 82.867 kb on - strand at 82.922 kb on + strand at 82.922 kb on + strand at 82.923 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic ultrapure 5mg/ml (C) remove 80,599 - HMPREF1058_RS00405 0.40 +0.3 80,606 + HMPREF1058_RS00405 0.40 -0.2 80,606 + HMPREF1058_RS00405 0.40 +0.1 80,607 - HMPREF1058_RS00405 0.40 +0.3 80,664 + HMPREF1058_RS00405 0.44 -0.6 80,665 - HMPREF1058_RS00405 0.44 +1.7 80,665 - HMPREF1058_RS00405 0.44 +0.5 80,769 + HMPREF1058_RS00405 0.51 -0.2 80,770 - HMPREF1058_RS00405 0.51 -0.9 80,794 - HMPREF1058_RS00405 0.53 -0.1 80,859 + HMPREF1058_RS00405 0.57 -0.6 80,859 + HMPREF1058_RS00405 0.57 +0.3 80,861 + HMPREF1058_RS00405 0.57 +0.4 80,915 + HMPREF1058_RS00405 0.61 +0.1 80,920 + HMPREF1058_RS00405 0.61 -0.2 80,920 + HMPREF1058_RS00405 0.61 -0.3 80,921 - HMPREF1058_RS00405 0.61 +0.8 80,921 - HMPREF1058_RS00405 0.61 +0.6 80,921 - HMPREF1058_RS00405 0.61 +0.1 80,931 + HMPREF1058_RS00405 0.62 +0.0 80,932 - HMPREF1058_RS00405 0.62 +0.4 80,932 - HMPREF1058_RS00405 0.62 -0.1 80,935 + HMPREF1058_RS00405 0.62 -0.1 81,084 - HMPREF1058_RS00405 0.72 -0.1 81,123 - HMPREF1058_RS00405 0.75 +1.0 81,126 + HMPREF1058_RS00405 0.75 -0.3 81,127 - HMPREF1058_RS00405 0.75 -0.4 81,166 + HMPREF1058_RS00405 0.78 +0.7 81,196 + -0.6 81,197 - HMPREF1058_RS00405 0.80 -0.0 81,209 - HMPREF1058_RS00405 0.81 -0.0 81,209 - HMPREF1058_RS00405 0.81 -0.0 81,209 - HMPREF1058_RS00405 0.81 -0.2 81,219 + HMPREF1058_RS00405 0.81 +0.2 81,220 - HMPREF1058_RS00405 0.81 -0.3 81,225 + HMPREF1058_RS00405 0.82 -0.1 81,227 + HMPREF1058_RS00405 0.82 -0.5 81,227 + HMPREF1058_RS00405 0.82 +0.0 81,227 + HMPREF1058_RS00405 0.82 -0.2 81,251 - HMPREF1058_RS00405 0.83 +0.5 81,251 - HMPREF1058_RS00405 0.83 +0.2 81,269 + HMPREF1058_RS00405 0.85 +0.1 81,269 + HMPREF1058_RS00405 0.85 -0.3 81,269 + HMPREF1058_RS00405 0.85 -1.5 81,273 + HMPREF1058_RS00405 0.85 -0.1 81,273 + HMPREF1058_RS00405 0.85 +0.1 81,273 + HMPREF1058_RS00405 0.85 -0.3 81,273 + +0.1 81,274 - HMPREF1058_RS00405 0.85 -0.7 81,274 - HMPREF1058_RS00405 0.85 +0.2 81,277 + HMPREF1058_RS00405 0.85 -0.1 81,277 + HMPREF1058_RS00405 0.85 +0.0 81,277 + HMPREF1058_RS00405 0.85 +0.2 81,278 - HMPREF1058_RS00405 0.85 +0.1 81,278 - HMPREF1058_RS00405 0.85 +0.0 81,365 + +0.1 81,365 + -0.0 81,366 - -0.5 81,366 - +0.0 81,368 - +1.0 81,368 - -0.3 81,393 + -0.3 81,414 - +0.0 81,414 - -0.1 81,425 + -0.2 81,505 + -0.9 81,563 + -0.1 81,563 + -0.0 81,564 - +0.4 81,564 - +0.3 81,621 - -2.3 81,703 - HMPREF1058_RS00400 0.30 -1.1 81,777 + HMPREF1058_RS00400 0.50 -0.6 81,797 + HMPREF1058_RS00400 0.55 -1.4 81,798 - HMPREF1058_RS00400 0.55 -0.9 81,798 - HMPREF1058_RS00400 0.55 -1.1 81,804 - HMPREF1058_RS00400 0.57 -2.0 81,883 - HMPREF1058_RS00400 0.79 -0.7 81,884 + HMPREF1058_RS00400 0.79 +0.8 81,885 - HMPREF1058_RS00400 0.79 -2.1 81,923 - HMPREF1058_RS00400 0.90 -1.6 81,933 - -1.2 81,961 - -1.5 82,077 + HMPREF1058_RS00395 0.13 -0.2 82,121 + HMPREF1058_RS00395 0.18 +0.0 82,121 + HMPREF1058_RS00395 0.18 +0.2 82,150 - HMPREF1058_RS00395 0.22 -0.1 82,155 - HMPREF1058_RS00395 0.22 +0.0 82,155 - HMPREF1058_RS00395 0.22 +0.1 82,159 - HMPREF1058_RS00395 0.23 -0.6 82,181 + HMPREF1058_RS00395 0.25 -0.3 82,182 - HMPREF1058_RS00395 0.25 -0.4 82,187 + HMPREF1058_RS00395 0.26 +0.7 82,187 + HMPREF1058_RS00395 0.26 -0.1 82,238 + HMPREF1058_RS00395 0.31 -0.2 82,238 + HMPREF1058_RS00395 0.31 +0.7 82,239 - HMPREF1058_RS00395 0.32 -0.2 82,246 - HMPREF1058_RS00395 0.32 +0.2 82,250 + HMPREF1058_RS00395 0.33 -0.2 82,250 + HMPREF1058_RS00395 0.33 +0.9 82,250 + HMPREF1058_RS00395 0.33 -0.4 82,253 - HMPREF1058_RS00395 0.33 +0.1 82,253 - HMPREF1058_RS00395 0.33 +0.1 82,345 + HMPREF1058_RS00395 0.43 -0.3 82,345 + HMPREF1058_RS00395 0.43 -0.9 82,347 + HMPREF1058_RS00395 0.44 -1.0 82,348 - HMPREF1058_RS00395 0.44 +1.0 82,348 - HMPREF1058_RS00395 0.44 +0.5 82,385 + HMPREF1058_RS00395 0.48 +0.4 82,386 - HMPREF1058_RS00395 0.48 -0.0 82,389 + HMPREF1058_RS00395 0.48 -0.8 82,390 - HMPREF1058_RS00395 0.48 -0.6 82,417 - HMPREF1058_RS00395 0.51 -0.4 82,417 - HMPREF1058_RS00395 0.51 -1.0 82,506 + HMPREF1058_RS00395 0.61 -0.5 82,632 - HMPREF1058_RS00395 0.76 -0.8 82,664 - HMPREF1058_RS00395 0.79 -0.2 82,692 - HMPREF1058_RS00395 0.82 -1.4 82,694 - HMPREF1058_RS00395 0.82 -0.7 82,748 - HMPREF1058_RS00395 0.88 -0.9 82,861 + +0.0 82,861 + +0.3 82,867 - -0.5 82,867 - +0.1 82,867 - +0.5 82,922 + -0.2 82,922 + +0.3 82,923 - +0.4
Or see this region's nucleotide sequence