Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01804

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01803 and CCNA_01804 are separated by 18 nucleotidesCCNA_01804 and CCNA_01805 are separated by 82 nucleotides CCNA_01803: CCNA_01803 - pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase component, at 1,926,921 to 1,928,207 _01803 CCNA_01804: CCNA_01804 - glutathione peroxidase, at 1,928,226 to 1,928,708 _01804 CCNA_01805: CCNA_01805 - dihydrolipoamide dehydrogenase, at 1,928,791 to 1,930,191 _01805 Position (kb) 1928 1929Strain fitness (log2 ratio) -1 0 1 2at 1928.201 kb on + strandat 1928.201 kb on + strandat 1928.214 kb on - strandat 1928.222 kb on + strandat 1928.230 kb on - strandat 1928.231 kb on - strandat 1928.233 kb on + strandat 1928.323 kb on + strand, within CCNA_01804at 1928.372 kb on + strand, within CCNA_01804at 1928.377 kb on - strand, within CCNA_01804at 1928.380 kb on - strand, within CCNA_01804at 1928.380 kb on - strand, within CCNA_01804at 1928.403 kb on + strand, within CCNA_01804at 1928.403 kb on + strand, within CCNA_01804at 1928.403 kb on + strand, within CCNA_01804at 1928.403 kb on + strand, within CCNA_01804at 1928.403 kb on + strand, within CCNA_01804at 1928.411 kb on - strand, within CCNA_01804at 1928.426 kb on + strand, within CCNA_01804at 1928.431 kb on + strand, within CCNA_01804at 1928.434 kb on + strand, within CCNA_01804at 1928.476 kb on - strand, within CCNA_01804at 1928.480 kb on + strand, within CCNA_01804at 1928.482 kb on + strand, within CCNA_01804at 1928.510 kb on - strand, within CCNA_01804at 1928.544 kb on + strand, within CCNA_01804at 1928.544 kb on + strand, within CCNA_01804at 1928.554 kb on - strand, within CCNA_01804at 1928.554 kb on - strand, within CCNA_01804at 1928.579 kb on + strand, within CCNA_01804at 1928.702 kb on + strandat 1928.702 kb on + strandat 1928.702 kb on + strandat 1928.702 kb on + strandat 1928.702 kb on + strandat 1928.702 kb on + strandat 1928.702 kb on + strandat 1928.710 kb on - strandat 1928.710 kb on - strandat 1928.710 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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1,928,201 + +2.1
1,928,201 + +1.9
1,928,214 - +1.2
1,928,222 + +2.0
1,928,230 - -0.1
1,928,231 - +1.2
1,928,233 + +2.0
1,928,323 + CCNA_01804 0.20 +2.2
1,928,372 + CCNA_01804 0.30 +1.5
1,928,377 - CCNA_01804 0.31 -0.3
1,928,380 - CCNA_01804 0.32 +1.1
1,928,380 - CCNA_01804 0.32 +0.7
1,928,403 + CCNA_01804 0.37 +1.4
1,928,403 + CCNA_01804 0.37 +2.5
1,928,403 + CCNA_01804 0.37 +1.5
1,928,403 + CCNA_01804 0.37 +2.0
1,928,403 + CCNA_01804 0.37 +1.3
1,928,411 - CCNA_01804 0.38 +0.2
1,928,426 + CCNA_01804 0.41 +2.2
1,928,431 + CCNA_01804 0.42 +1.9
1,928,434 + CCNA_01804 0.43 +2.2
1,928,476 - CCNA_01804 0.52 +0.3
1,928,480 + CCNA_01804 0.53 +1.8
1,928,482 + CCNA_01804 0.53 +2.3
1,928,510 - CCNA_01804 0.59 -0.5
1,928,544 + CCNA_01804 0.66 +2.3
1,928,544 + CCNA_01804 0.66 +2.4
1,928,554 - CCNA_01804 0.68 -0.1
1,928,554 - CCNA_01804 0.68 -0.1
1,928,579 + CCNA_01804 0.73 +2.4
1,928,702 + +2.6
1,928,702 + +2.2
1,928,702 + +2.2
1,928,702 + +1.6
1,928,702 + +1.9
1,928,702 + +1.9
1,928,702 + +1.3
1,928,710 - +0.4
1,928,710 - -0.9
1,928,710 - -0.6

Or see this region's nucleotide sequence