Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06725

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06725 and AO356_06730 are separated by 4 nucleotides AO356_06725: AO356_06725 - hypothetical protein, at 1,484,679 to 1,486,949 _06725 AO356_06730: AO356_06730 - hypothetical protein, at 1,486,954 to 1,487,595 _06730 Position (kb) 1484 1485 1486 1487Strain fitness (log2 ratio) -2 -1 0 1at 1483.896 kb on - strandat 1484.339 kb on - strandat 1484.376 kb on - strandat 1484.458 kb on - strandat 1484.464 kb on - strandat 1484.464 kb on - strandat 1484.583 kb on - strandat 1484.921 kb on + strand, within AO356_06725at 1484.971 kb on + strand, within AO356_06725at 1484.973 kb on + strand, within AO356_06725at 1484.973 kb on + strand, within AO356_06725at 1484.974 kb on - strand, within AO356_06725at 1485.141 kb on - strand, within AO356_06725at 1485.362 kb on + strand, within AO356_06725at 1485.461 kb on + strand, within AO356_06725at 1485.494 kb on + strand, within AO356_06725at 1485.571 kb on + strand, within AO356_06725at 1485.597 kb on - strand, within AO356_06725at 1485.629 kb on + strand, within AO356_06725at 1485.631 kb on + strand, within AO356_06725at 1485.632 kb on - strand, within AO356_06725at 1485.635 kb on + strand, within AO356_06725at 1485.635 kb on + strand, within AO356_06725at 1485.635 kb on + strand, within AO356_06725at 1485.635 kb on + strand, within AO356_06725at 1485.636 kb on - strand, within AO356_06725at 1485.636 kb on - strand, within AO356_06725at 1485.636 kb on - strand, within AO356_06725at 1485.666 kb on + strand, within AO356_06725at 1485.774 kb on - strand, within AO356_06725at 1485.784 kb on + strand, within AO356_06725at 1485.784 kb on + strand, within AO356_06725at 1485.790 kb on + strand, within AO356_06725at 1485.858 kb on + strand, within AO356_06725at 1485.858 kb on + strand, within AO356_06725at 1485.862 kb on - strand, within AO356_06725at 1485.983 kb on + strand, within AO356_06725at 1486.107 kb on - strand, within AO356_06725at 1486.127 kb on + strand, within AO356_06725at 1486.217 kb on - strand, within AO356_06725at 1486.226 kb on - strand, within AO356_06725at 1486.226 kb on - strand, within AO356_06725at 1486.235 kb on - strand, within AO356_06725at 1486.241 kb on - strand, within AO356_06725at 1486.244 kb on - strand, within AO356_06725at 1486.333 kb on + strand, within AO356_06725at 1486.334 kb on - strand, within AO356_06725at 1486.353 kb on + strand, within AO356_06725at 1486.463 kb on + strand, within AO356_06725at 1486.487 kb on - strand, within AO356_06725at 1486.503 kb on - strand, within AO356_06725at 1486.774 kb on - strandat 1486.774 kb on - strandat 1486.804 kb on + strandat 1486.836 kb on - strandat 1486.931 kb on + strandat 1487.000 kb on + strandat 1487.022 kb on - strand, within AO356_06730at 1487.045 kb on + strand, within AO356_06730at 1487.064 kb on - strand, within AO356_06730at 1487.097 kb on + strand, within AO356_06730at 1487.132 kb on + strand, within AO356_06730at 1487.171 kb on - strand, within AO356_06730at 1487.175 kb on - strand, within AO356_06730at 1487.199 kb on + strand, within AO356_06730at 1487.285 kb on + strand, within AO356_06730at 1487.286 kb on - strand, within AO356_06730at 1487.378 kb on + strand, within AO356_06730at 1487.404 kb on - strand, within AO356_06730at 1487.559 kb on - strandat 1487.603 kb on + strandat 1487.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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1,483,896 - +0.8
1,484,339 - -0.1
1,484,376 - +1.2
1,484,458 - -0.7
1,484,464 - +0.5
1,484,464 - -0.7
1,484,583 - -2.3
1,484,921 + AO356_06725 0.11 +0.3
1,484,971 + AO356_06725 0.13 +0.5
1,484,973 + AO356_06725 0.13 +0.4
1,484,973 + AO356_06725 0.13 +0.1
1,484,974 - AO356_06725 0.13 +0.3
1,485,141 - AO356_06725 0.20 +1.6
1,485,362 + AO356_06725 0.30 +0.9
1,485,461 + AO356_06725 0.34 -0.1
1,485,494 + AO356_06725 0.36 +0.3
1,485,571 + AO356_06725 0.39 +0.8
1,485,597 - AO356_06725 0.40 +0.8
1,485,629 + AO356_06725 0.42 +0.3
1,485,631 + AO356_06725 0.42 -0.9
1,485,632 - AO356_06725 0.42 +0.4
1,485,635 + AO356_06725 0.42 -0.5
1,485,635 + AO356_06725 0.42 +0.9
1,485,635 + AO356_06725 0.42 +0.4
1,485,635 + AO356_06725 0.42 +0.3
1,485,636 - AO356_06725 0.42 -1.8
1,485,636 - AO356_06725 0.42 -0.1
1,485,636 - AO356_06725 0.42 +0.6
1,485,666 + AO356_06725 0.43 +0.2
1,485,774 - AO356_06725 0.48 -1.3
1,485,784 + AO356_06725 0.49 -0.2
1,485,784 + AO356_06725 0.49 +0.0
1,485,790 + AO356_06725 0.49 +1.6
1,485,858 + AO356_06725 0.52 +0.1
1,485,858 + AO356_06725 0.52 +0.3
1,485,862 - AO356_06725 0.52 +0.9
1,485,983 + AO356_06725 0.57 -0.7
1,486,107 - AO356_06725 0.63 +0.7
1,486,127 + AO356_06725 0.64 -0.3
1,486,217 - AO356_06725 0.68 +0.1
1,486,226 - AO356_06725 0.68 -2.4
1,486,226 - AO356_06725 0.68 +0.1
1,486,235 - AO356_06725 0.69 -1.2
1,486,241 - AO356_06725 0.69 -0.5
1,486,244 - AO356_06725 0.69 +0.9
1,486,333 + AO356_06725 0.73 +0.5
1,486,334 - AO356_06725 0.73 +0.4
1,486,353 + AO356_06725 0.74 -0.3
1,486,463 + AO356_06725 0.79 -1.1
1,486,487 - AO356_06725 0.80 -0.2
1,486,503 - AO356_06725 0.80 +1.1
1,486,774 - -0.4
1,486,774 - +1.4
1,486,804 + -0.6
1,486,836 - +0.5
1,486,931 + +0.9
1,487,000 + -0.3
1,487,022 - AO356_06730 0.11 +0.7
1,487,045 + AO356_06730 0.14 +1.4
1,487,064 - AO356_06730 0.17 +0.4
1,487,097 + AO356_06730 0.22 +0.7
1,487,132 + AO356_06730 0.28 +0.5
1,487,171 - AO356_06730 0.34 -0.3
1,487,175 - AO356_06730 0.34 +0.3
1,487,199 + AO356_06730 0.38 +0.7
1,487,285 + AO356_06730 0.52 -0.2
1,487,286 - AO356_06730 0.52 -0.0
1,487,378 + AO356_06730 0.66 +0.7
1,487,404 - AO356_06730 0.70 +0.6
1,487,559 - +0.3
1,487,603 + +0.8
1,487,650 + -0.2

Or see this region's nucleotide sequence