Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03880 and AO356_03885 are separated by 274 nucleotides AO356_03885 and AO356_03890 are separated by 330 nucleotides
AO356_03880: AO356_03880 - flagellin, at 857,838 to 858,686
_03880
AO356_03885: AO356_03885 - beta-ketoacyl-ACP synthase, at 858,961 to 859,887
_03885
AO356_03890: AO356_03890 - glycosyl transferase family 2, at 860,218 to 863,112
_03890
Position (kb) 858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 857.964 kb on + strand, within AO356_03880 at 857.965 kb on - strand, within AO356_03880 at 858.128 kb on + strand, within AO356_03880 at 858.128 kb on + strand, within AO356_03880 at 858.129 kb on - strand, within AO356_03880 at 858.359 kb on + strand, within AO356_03880 at 858.413 kb on + strand, within AO356_03880 at 858.413 kb on + strand, within AO356_03880 at 858.413 kb on + strand, within AO356_03880 at 858.413 kb on + strand, within AO356_03880 at 858.413 kb on + strand, within AO356_03880 at 858.414 kb on - strand, within AO356_03880 at 858.414 kb on - strand, within AO356_03880 at 858.414 kb on - strand, within AO356_03880 at 858.414 kb on - strand, within AO356_03880 at 858.414 kb on - strand, within AO356_03880 at 858.474 kb on - strand, within AO356_03880 at 858.665 kb on + strand at 858.665 kb on + strand at 858.665 kb on + strand at 858.665 kb on + strand at 858.672 kb on + strand at 858.672 kb on + strand at 858.678 kb on + strand at 858.749 kb on - strand at 858.761 kb on + strand at 858.761 kb on + strand at 858.762 kb on - strand at 858.762 kb on - strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.764 kb on + strand at 858.765 kb on - strand at 858.765 kb on - strand at 858.765 kb on - strand at 858.765 kb on - strand at 858.765 kb on - strand at 858.768 kb on + strand at 858.768 kb on + strand at 858.768 kb on + strand at 858.768 kb on + strand at 858.768 kb on + strand at 858.769 kb on - strand at 859.086 kb on + strand, within AO356_03885 at 859.087 kb on - strand, within AO356_03885 at 859.250 kb on - strand, within AO356_03885 at 859.523 kb on + strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.538 kb on + strand, within AO356_03885 at 859.538 kb on + strand, within AO356_03885 at 859.539 kb on - strand, within AO356_03885 at 859.539 kb on - strand, within AO356_03885 at 859.539 kb on - strand, within AO356_03885 at 859.558 kb on + strand, within AO356_03885 at 859.558 kb on + strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.560 kb on + strand, within AO356_03885 at 859.560 kb on + strand, within AO356_03885 at 859.832 kb on + strand at 859.832 kb on + strand at 859.832 kb on + strand at 859.833 kb on - strand at 859.833 kb on - strand at 859.833 kb on - strand at 859.833 kb on - strand at 859.836 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.877 kb on - strand at 859.915 kb on + strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 860.013 kb on + strand at 860.013 kb on + strand at 860.014 kb on - strand at 860.018 kb on + strand at 860.018 kb on + strand at 860.019 kb on - strand at 860.019 kb on - strand at 860.036 kb on + strand at 860.037 kb on - strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.044 kb on - strand at 860.044 kb on - strand at 860.091 kb on + strand at 860.092 kb on - strand at 860.116 kb on + strand at 860.180 kb on + strand at 860.181 kb on - strand at 860.220 kb on - strand at 860.242 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.301 kb on - strand at 860.301 kb on - strand at 860.421 kb on - strand at 860.488 kb on + strand at 860.488 kb on + strand at 860.488 kb on + strand at 860.488 kb on + strand at 860.489 kb on - strand at 860.489 kb on - strand at 860.489 kb on - strand at 860.489 kb on - strand at 860.582 kb on + strand, within AO356_03890 at 860.582 kb on + strand, within AO356_03890 at 860.583 kb on - strand, within AO356_03890 at 860.664 kb on + strand, within AO356_03890 at 860.664 kb on + strand, within AO356_03890 at 860.664 kb on + strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.790 kb on - strand, within AO356_03890 at 860.790 kb on - strand, within AO356_03890
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 857,964 + AO356_03880 0.15 +0.7 857,965 - AO356_03880 0.15 +0.9 858,128 + AO356_03880 0.34 +0.6 858,128 + AO356_03880 0.34 +1.4 858,129 - AO356_03880 0.34 +1.6 858,359 + AO356_03880 0.61 +0.3 858,413 + AO356_03880 0.68 +0.6 858,413 + AO356_03880 0.68 +1.0 858,413 + AO356_03880 0.68 +0.3 858,413 + AO356_03880 0.68 +1.1 858,413 + AO356_03880 0.68 -0.6 858,414 - AO356_03880 0.68 +0.9 858,414 - AO356_03880 0.68 +0.6 858,414 - AO356_03880 0.68 +0.9 858,414 - AO356_03880 0.68 +1.5 858,414 - AO356_03880 0.68 +1.2 858,474 - AO356_03880 0.75 +1.5 858,665 + +0.7 858,665 + +0.3 858,665 + +0.5 858,665 + +1.0 858,672 + +0.4 858,672 + +1.4 858,678 + +0.4 858,749 - +0.7 858,761 + +0.3 858,761 + +0.9 858,762 - +0.3 858,762 - +0.6 858,764 + +1.3 858,764 + +1.0 858,764 + +1.0 858,764 + +0.2 858,764 + +1.2 858,764 + +0.5 858,764 + +1.1 858,765 - +0.3 858,765 - -0.0 858,765 - +0.3 858,765 - +0.6 858,765 - +1.4 858,768 + +0.1 858,768 + +0.3 858,768 + +1.0 858,768 + +1.3 858,768 + +1.0 858,769 - +0.8 859,086 + AO356_03885 0.13 +0.1 859,087 - AO356_03885 0.14 -0.4 859,250 - AO356_03885 0.31 +0.2 859,523 + AO356_03885 0.61 -0.7 859,524 - AO356_03885 0.61 -1.1 859,524 - AO356_03885 0.61 -1.4 859,524 - AO356_03885 0.61 -0.4 859,524 - AO356_03885 0.61 +0.7 859,524 - AO356_03885 0.61 -0.1 859,534 + AO356_03885 0.62 +0.2 859,534 + AO356_03885 0.62 -1.6 859,534 + AO356_03885 0.62 +1.2 859,534 + AO356_03885 0.62 +1.0 859,534 + AO356_03885 0.62 -0.9 859,534 + AO356_03885 0.62 +0.3 859,534 + AO356_03885 0.62 -0.0 859,534 + AO356_03885 0.62 -0.7 859,534 + AO356_03885 0.62 +0.2 859,534 + AO356_03885 0.62 -1.5 859,534 + AO356_03885 0.62 -1.6 859,535 - AO356_03885 0.62 -0.8 859,535 - AO356_03885 0.62 -0.4 859,535 - AO356_03885 0.62 +0.4 859,535 - AO356_03885 0.62 +0.6 859,535 - AO356_03885 0.62 -0.1 859,535 - AO356_03885 0.62 -0.5 859,538 + AO356_03885 0.62 +0.4 859,538 + AO356_03885 0.62 -0.5 859,539 - AO356_03885 0.62 -0.4 859,539 - AO356_03885 0.62 -0.9 859,539 - AO356_03885 0.62 +0.3 859,558 + AO356_03885 0.64 -0.4 859,558 + AO356_03885 0.64 -0.1 859,559 - AO356_03885 0.65 -0.5 859,559 - AO356_03885 0.65 -1.2 859,559 - AO356_03885 0.65 -1.2 859,559 - AO356_03885 0.65 -0.8 859,560 + AO356_03885 0.65 -0.5 859,560 + AO356_03885 0.65 +1.2 859,832 + -0.2 859,832 + +0.2 859,832 + -0.9 859,833 - +1.6 859,833 - +0.2 859,833 - +1.2 859,833 - +0.7 859,836 + +1.2 859,859 + -3.1 859,859 + -2.9 859,859 + +0.7 859,859 + -0.7 859,859 + -1.7 859,859 + +0.2 859,860 - +0.1 859,860 - +0.5 859,860 - +0.3 859,860 - -2.1 859,860 - -0.6 859,877 - +0.2 859,915 + -0.8 859,916 - -0.0 859,916 - +0.8 859,916 - +0.4 860,013 + +0.4 860,013 + -0.2 860,014 - -0.9 860,018 + -0.3 860,018 + +0.2 860,019 - -1.4 860,019 - +1.8 860,036 + -0.5 860,037 - +2.2 860,043 + -0.0 860,043 + -1.4 860,043 + -0.4 860,043 + -0.4 860,043 + +0.9 860,043 + +0.5 860,043 + +0.5 860,043 + -1.8 860,044 - +0.2 860,044 - +1.5 860,091 + -0.8 860,092 - +0.5 860,116 + +0.5 860,180 + +0.3 860,181 - +0.2 860,220 - +0.3 860,242 + -1.1 860,300 + -0.0 860,300 + -0.6 860,300 + +0.0 860,300 + -0.6 860,300 + -1.0 860,301 - +1.2 860,301 - -1.3 860,421 - +0.1 860,488 + -0.2 860,488 + +0.7 860,488 + -0.4 860,488 + +0.2 860,489 - -0.9 860,489 - +0.4 860,489 - +0.1 860,489 - -1.2 860,582 + AO356_03890 0.13 +0.4 860,582 + AO356_03890 0.13 +0.5 860,583 - AO356_03890 0.13 +0.4 860,664 + AO356_03890 0.15 +0.1 860,664 + AO356_03890 0.15 -0.5 860,664 + AO356_03890 0.15 -0.5 860,665 - AO356_03890 0.15 +0.1 860,665 - AO356_03890 0.15 +1.0 860,665 - AO356_03890 0.15 +0.1 860,665 - AO356_03890 0.15 +1.2 860,665 - AO356_03890 0.15 +0.1 860,665 - AO356_03890 0.15 -0.4 860,790 - AO356_03890 0.20 -1.4 860,790 - AO356_03890 0.20 +0.3
Or see this region's nucleotide sequence