Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000502 and ABIE53_000503 are separated by 130 nucleotides ABIE53_000503 and ABIE53_000504 are separated by 2 nucleotides ABIE53_000504 and ABIE53_000505 are separated by 170 nucleotides
ABIE53_000502: ABIE53_000502 - hypothetical protein, at 540,942 to 541,637
_000502
ABIE53_000503: ABIE53_000503 - DNA invertase Pin-like site-specific DNA recombinase, at 541,768 to 542,340
_000503
ABIE53_000504: ABIE53_000504 - DNA invertase Pin-like site-specific DNA recombinase, at 542,343 to 542,933
_000504
ABIE53_000505: ABIE53_000505 - EAL domain-containing protein (putative c-di-GMP-specific phosphodiesterase class I), at 543,104 to 544,429
_000505
Position (kb) 542
543 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 541.466 kb on + strand, within ABIE53_000502 at 541.466 kb on + strand, within ABIE53_000502 at 541.466 kb on + strand, within ABIE53_000502 at 541.466 kb on + strand, within ABIE53_000502 at 541.466 kb on + strand, within ABIE53_000502 at 541.467 kb on - strand, within ABIE53_000502 at 541.599 kb on - strand at 541.599 kb on - strand at 541.599 kb on - strand at 541.599 kb on - strand at 541.601 kb on - strand at 541.664 kb on + strand at 541.664 kb on + strand at 541.664 kb on + strand at 541.665 kb on - strand at 541.665 kb on - strand at 541.665 kb on - strand at 541.665 kb on - strand at 541.665 kb on - strand at 541.665 kb on - strand at 541.668 kb on + strand at 541.668 kb on + strand at 541.668 kb on + strand at 541.669 kb on - strand at 541.669 kb on - strand at 541.669 kb on - strand at 541.669 kb on - strand at 541.669 kb on - strand at 541.669 kb on - strand at 541.674 kb on + strand at 541.675 kb on - strand at 541.675 kb on - strand at 541.794 kb on + strand at 541.823 kb on + strand at 541.823 kb on + strand at 541.824 kb on - strand at 541.824 kb on - strand at 541.824 kb on - strand at 541.917 kb on - strand, within ABIE53_000503 at 541.938 kb on + strand, within ABIE53_000503 at 541.938 kb on + strand, within ABIE53_000503 at 541.939 kb on - strand, within ABIE53_000503 at 542.338 kb on + strand at 542.344 kb on + strand at 542.344 kb on + strand at 542.344 kb on + strand at 542.344 kb on + strand at 542.345 kb on - strand at 542.345 kb on - strand at 542.574 kb on + strand, within ABIE53_000504 at 542.633 kb on + strand, within ABIE53_000504 at 542.633 kb on + strand, within ABIE53_000504 at 542.634 kb on - strand, within ABIE53_000504 at 542.751 kb on + strand, within ABIE53_000504 at 542.757 kb on + strand, within ABIE53_000504 at 542.758 kb on - strand, within ABIE53_000504 at 542.936 kb on + strand at 542.936 kb on + strand at 542.954 kb on + strand at 542.954 kb on + strand at 542.954 kb on + strand at 542.955 kb on - strand at 542.955 kb on - strand at 542.955 kb on - strand at 542.955 kb on - strand at 542.981 kb on + strand at 542.981 kb on + strand at 542.981 kb on + strand at 542.982 kb on - strand at 543.103 kb on + strand at 543.103 kb on + strand at 543.103 kb on + strand at 543.103 kb on + strand at 543.103 kb on + strand at 543.104 kb on - strand at 543.104 kb on - strand at 543.104 kb on - strand at 543.332 kb on + strand, within ABIE53_000505 at 543.332 kb on + strand, within ABIE53_000505 at 543.332 kb on + strand, within ABIE53_000505 at 543.333 kb on - strand, within ABIE53_000505 at 543.433 kb on + strand, within ABIE53_000505 at 543.433 kb on + strand, within ABIE53_000505 at 543.433 kb on + strand, within ABIE53_000505 at 543.433 kb on + strand, within ABIE53_000505 at 543.433 kb on + strand, within ABIE53_000505 at 543.433 kb on + strand, within ABIE53_000505 at 543.433 kb on + strand, within ABIE53_000505 at 543.433 kb on + strand, within ABIE53_000505 at 543.433 kb on + strand, within ABIE53_000505 at 543.433 kb on + strand, within ABIE53_000505 at 543.433 kb on + strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.434 kb on - strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.435 kb on + strand, within ABIE53_000505 at 543.436 kb on - strand, within ABIE53_000505 at 543.436 kb on - strand, within ABIE53_000505 at 543.436 kb on - strand, within ABIE53_000505 at 543.436 kb on - strand, within ABIE53_000505 at 543.436 kb on - strand, within ABIE53_000505 at 543.436 kb on - strand, within ABIE53_000505 at 543.464 kb on - strand, within ABIE53_000505 at 543.697 kb on + strand, within ABIE53_000505 at 543.697 kb on + strand, within ABIE53_000505 at 543.698 kb on - strand, within ABIE53_000505 at 543.698 kb on - strand, within ABIE53_000505 at 543.760 kb on + strand, within ABIE53_000505 at 543.760 kb on + strand, within ABIE53_000505 at 543.761 kb on - strand, within ABIE53_000505 at 543.761 kb on - strand, within ABIE53_000505 at 543.762 kb on + strand, within ABIE53_000505 at 543.763 kb on - strand, within ABIE53_000505 at 543.763 kb on - strand, within ABIE53_000505 at 543.795 kb on - strand, within ABIE53_000505 at 543.810 kb on + strand, within ABIE53_000505 at 543.810 kb on + strand, within ABIE53_000505 at 543.810 kb on + strand, within ABIE53_000505
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 541,466 + ABIE53_000502 0.75 +2.7 541,466 + ABIE53_000502 0.75 +2.5 541,466 + ABIE53_000502 0.75 +2.5 541,466 + ABIE53_000502 0.75 +2.4 541,466 + ABIE53_000502 0.75 +1.8 541,467 - ABIE53_000502 0.75 +1.8 541,599 - +2.0 541,599 - +0.7 541,599 - +1.1 541,599 - +0.3 541,601 - -0.3 541,664 + +2.2 541,664 + +2.0 541,664 + +2.1 541,665 - +1.2 541,665 - -1.2 541,665 - +1.1 541,665 - +2.0 541,665 - +2.2 541,665 - +1.4 541,668 + +2.2 541,668 + +1.0 541,668 + +4.9 541,669 - +0.4 541,669 - +1.4 541,669 - +0.1 541,669 - +0.3 541,669 - +0.7 541,669 - +1.0 541,674 + +2.3 541,675 - -0.0 541,675 - +2.0 541,794 + -0.3 541,823 + +2.8 541,823 + -0.1 541,824 - -0.8 541,824 - +1.3 541,824 - +0.8 541,917 - ABIE53_000503 0.26 -0.3 541,938 + ABIE53_000503 0.30 -0.6 541,938 + ABIE53_000503 0.30 -0.8 541,939 - ABIE53_000503 0.30 +0.7 542,338 + +0.4 542,344 + -0.4 542,344 + -0.4 542,344 + -0.8 542,344 + -0.4 542,345 - -0.7 542,345 - -1.0 542,574 + ABIE53_000504 0.39 +0.6 542,633 + ABIE53_000504 0.49 +2.2 542,633 + ABIE53_000504 0.49 -0.1 542,634 - ABIE53_000504 0.49 -0.0 542,751 + ABIE53_000504 0.69 -0.2 542,757 + ABIE53_000504 0.70 +0.8 542,758 - ABIE53_000504 0.70 +2.0 542,936 + +2.6 542,936 + +3.7 542,954 + +1.4 542,954 + +0.3 542,954 + +2.0 542,955 - +1.9 542,955 - -0.8 542,955 - +2.0 542,955 - +1.0 542,981 + +2.0 542,981 + +2.3 542,981 + +3.3 542,982 - +0.3 543,103 + +0.2 543,103 + +0.1 543,103 + +1.0 543,103 + +0.2 543,103 + -0.0 543,104 - -1.8 543,104 - -0.0 543,104 - +1.6 543,332 + ABIE53_000505 0.17 -0.3 543,332 + ABIE53_000505 0.17 -0.9 543,332 + ABIE53_000505 0.17 +0.3 543,333 - ABIE53_000505 0.17 +0.4 543,433 + ABIE53_000505 0.25 +0.5 543,433 + ABIE53_000505 0.25 +2.4 543,433 + ABIE53_000505 0.25 -1.8 543,433 + ABIE53_000505 0.25 -1.8 543,433 + ABIE53_000505 0.25 +0.2 543,433 + ABIE53_000505 0.25 -0.3 543,433 + ABIE53_000505 0.25 +0.8 543,433 + ABIE53_000505 0.25 -2.3 543,433 + ABIE53_000505 0.25 +2.4 543,433 + ABIE53_000505 0.25 -1.3 543,433 + ABIE53_000505 0.25 +0.4 543,434 - ABIE53_000505 0.25 +0.1 543,434 - ABIE53_000505 0.25 -0.3 543,434 - ABIE53_000505 0.25 +0.1 543,434 - ABIE53_000505 0.25 -1.0 543,434 - ABIE53_000505 0.25 +1.6 543,434 - ABIE53_000505 0.25 -1.0 543,434 - ABIE53_000505 0.25 +1.7 543,434 - ABIE53_000505 0.25 +0.4 543,434 - ABIE53_000505 0.25 -0.8 543,434 - ABIE53_000505 0.25 -0.0 543,434 - ABIE53_000505 0.25 +0.3 543,434 - ABIE53_000505 0.25 -0.7 543,435 + ABIE53_000505 0.25 -0.3 543,435 + ABIE53_000505 0.25 +0.4 543,435 + ABIE53_000505 0.25 -1.0 543,435 + ABIE53_000505 0.25 +0.4 543,435 + ABIE53_000505 0.25 -1.1 543,435 + ABIE53_000505 0.25 -1.8 543,435 + ABIE53_000505 0.25 -0.6 543,435 + ABIE53_000505 0.25 +2.6 543,435 + ABIE53_000505 0.25 +0.4 543,435 + ABIE53_000505 0.25 +0.4 543,435 + ABIE53_000505 0.25 -1.6 543,435 + ABIE53_000505 0.25 -2.0 543,436 - ABIE53_000505 0.25 -1.7 543,436 - ABIE53_000505 0.25 -0.2 543,436 - ABIE53_000505 0.25 -0.0 543,436 - ABIE53_000505 0.25 +0.6 543,436 - ABIE53_000505 0.25 -2.2 543,436 - ABIE53_000505 0.25 -0.0 543,464 - ABIE53_000505 0.27 -1.4 543,697 + ABIE53_000505 0.45 -1.1 543,697 + ABIE53_000505 0.45 +0.7 543,698 - ABIE53_000505 0.45 -0.7 543,698 - ABIE53_000505 0.45 -0.6 543,760 + ABIE53_000505 0.49 -0.1 543,760 + ABIE53_000505 0.49 -1.0 543,761 - ABIE53_000505 0.50 +1.0 543,761 - ABIE53_000505 0.50 +0.8 543,762 + ABIE53_000505 0.50 -0.3 543,763 - ABIE53_000505 0.50 -0.3 543,763 - ABIE53_000505 0.50 +1.0 543,795 - ABIE53_000505 0.52 -0.7 543,810 + ABIE53_000505 0.53 +0.1 543,810 + ABIE53_000505 0.53 -2.3 543,810 + ABIE53_000505 0.53 +0.1
Or see this region's nucleotide sequence