Strain Fitness in Sinorhizobium meliloti 1021 around SMc01800

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01798 and SMc01799 are separated by 11 nucleotidesSMc01799 and SMc01800 are separated by 199 nucleotidesSMc01800 and SMc01801 are separated by 70 nucleotides SMc01798: SMc01798 - hypothetical protein, at 1,345,828 to 1,346,568 SMc01798 SMc01799: SMc01799 - signal peptide protein, at 1,346,580 to 1,346,768 SMc01799 SMc01800: SMc01800 - cytochrome C oxidase assembly transmembrane protein, at 1,346,968 to 1,348,071 SMc01800 SMc01801: SMc01801 - N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data), at 1,348,142 to 1,349,074 SMc01801 Position (kb) 1346 1347 1348 1349Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1345.970 kb on + strand, within SMc01798at 1346.028 kb on - strand, within SMc01798at 1346.133 kb on + strand, within SMc01798at 1346.210 kb on + strand, within SMc01798at 1346.210 kb on + strand, within SMc01798at 1346.210 kb on + strand, within SMc01798at 1346.210 kb on + strand, within SMc01798at 1346.211 kb on - strand, within SMc01798at 1346.372 kb on + strand, within SMc01798at 1346.569 kb on - strandat 1346.662 kb on + strand, within SMc01799at 1346.663 kb on - strand, within SMc01799at 1346.731 kb on + strand, within SMc01799at 1346.785 kb on - strandat 1347.227 kb on - strand, within SMc01800at 1347.803 kb on - strand, within SMc01800at 1348.037 kb on - strandat 1348.037 kb on - strandat 1348.055 kb on + strandat 1348.548 kb on + strand, within SMc01801at 1348.675 kb on + strand, within SMc01801at 1348.676 kb on - strand, within SMc01801

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,345,970 + SMc01798 0.19 -0.8
1,346,028 - SMc01798 0.27 +0.1
1,346,133 + SMc01798 0.41 -0.2
1,346,210 + SMc01798 0.52 -0.0
1,346,210 + SMc01798 0.52 -0.3
1,346,210 + SMc01798 0.52 -0.5
1,346,210 + SMc01798 0.52 -0.0
1,346,211 - SMc01798 0.52 -0.4
1,346,372 + SMc01798 0.73 -0.3
1,346,569 - -0.3
1,346,662 + SMc01799 0.43 +0.0
1,346,663 - SMc01799 0.44 -1.0
1,346,731 + SMc01799 0.80 -0.2
1,346,785 - +0.3
1,347,227 - SMc01800 0.23 +0.2
1,347,803 - SMc01800 0.76 +0.9
1,348,037 - +1.0
1,348,037 - +2.2
1,348,055 + -0.1
1,348,548 + SMc01801 0.44 -4.0
1,348,675 + SMc01801 0.57 -4.1
1,348,676 - SMc01801 0.57 -4.9

Or see this region's nucleotide sequence