Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00059 and SMc00060 overlap by 29 nucleotides SMc00060 and SMc00061 are separated by 71 nucleotides SMc00061 and SMc00120 are separated by 243 nucleotides
SMc00059: SMc00059 - sensor histidine kinase, at 1,093,568 to 1,095,145
SMc00059
SMc00060: SMc00060 - hypothetical protein, at 1,095,117 to 1,096,076
SMc00060
SMc00061: SMc00061 - hypothetical protein, at 1,096,148 to 1,096,498
SMc00061
SMc00120: SMc00120 - hypothetical protein, at 1,096,742 to 1,097,797
SMc00120
Position (kb)
1095
1096
1097 Strain fitness (log2 ratio)
-2
-1
0
1 at 1095.315 kb on + strand, within SMc00060 at 1095.446 kb on - strand, within SMc00060 at 1095.446 kb on - strand, within SMc00060 at 1095.446 kb on - strand, within SMc00060 at 1095.446 kb on - strand, within SMc00060 at 1095.529 kb on + strand, within SMc00060 at 1095.529 kb on + strand, within SMc00060 at 1095.529 kb on + strand, within SMc00060 at 1095.529 kb on + strand, within SMc00060 at 1095.530 kb on - strand, within SMc00060 at 1095.530 kb on - strand, within SMc00060 at 1095.609 kb on + strand, within SMc00060 at 1095.610 kb on - strand, within SMc00060 at 1095.610 kb on - strand, within SMc00060 at 1096.311 kb on - strand, within SMc00061 at 1096.351 kb on + strand, within SMc00061 at 1096.351 kb on + strand, within SMc00061 at 1096.352 kb on - strand, within SMc00061 at 1096.453 kb on - strand, within SMc00061 at 1096.496 kb on + strand at 1096.497 kb on - strand at 1096.497 kb on - strand at 1096.685 kb on - strand at 1096.708 kb on + strand at 1096.708 kb on + strand at 1096.728 kb on - strand at 1096.743 kb on + strand at 1096.744 kb on - strand at 1096.744 kb on - strand at 1096.744 kb on - strand at 1096.744 kb on - strand at 1096.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,095,315 + SMc00060 0.21 -1.0 1,095,446 - SMc00060 0.34 -0.1 1,095,446 - SMc00060 0.34 -1.8 1,095,446 - SMc00060 0.34 -2.2 1,095,446 - SMc00060 0.34 -1.3 1,095,529 + SMc00060 0.43 -0.4 1,095,529 + SMc00060 0.43 -0.9 1,095,529 + SMc00060 0.43 -0.8 1,095,529 + SMc00060 0.43 -0.9 1,095,530 - SMc00060 0.43 -1.0 1,095,530 - SMc00060 0.43 -2.4 1,095,609 + SMc00060 0.51 -0.2 1,095,610 - SMc00060 0.51 -1.9 1,095,610 - SMc00060 0.51 -0.4 1,096,311 - SMc00061 0.46 +0.4 1,096,351 + SMc00061 0.58 +0.1 1,096,351 + SMc00061 0.58 -0.1 1,096,352 - SMc00061 0.58 -0.1 1,096,453 - SMc00061 0.87 -0.1 1,096,496 + -0.3 1,096,497 - -0.2 1,096,497 - -1.1 1,096,685 - -0.3 1,096,708 + +0.1 1,096,708 + +0.7 1,096,728 - -0.2 1,096,743 + +0.4 1,096,744 - +0.3 1,096,744 - +0.0 1,096,744 - +0.1 1,096,744 - +0.3 1,096,744 - -0.0
Or see this region's nucleotide sequence