Strain Fitness in Sinorhizobium meliloti 1021 around SMa2279

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2275 and SMa2279 are separated by 833 nucleotidesSMa2279 and SMa2281 overlap by 4 nucleotidesSMa2281 and SMa2285 are separated by 607 nucleotides SMa2275: SMa2275 - hypothetical protein, at 1,268,802 to 1,269,077 SMa2275 SMa2279: SMa2279 - hypothetical protein, at 1,269,911 to 1,270,393 SMa2279 SMa2281: SMa2281 - hypothetical protein, at 1,270,390 to 1,270,722 SMa2281 SMa2285: SMa2285 - hypothetical protein, at 1,271,330 to 1,271,806 SMa2285 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -2 -1 0 1 2at 1269.231 kb on + strandat 1269.321 kb on + strandat 1269.322 kb on - strandat 1269.378 kb on + strandat 1269.378 kb on + strandat 1269.379 kb on - strandat 1269.379 kb on - strandat 1269.382 kb on + strandat 1269.385 kb on - strandat 1269.451 kb on + strandat 1269.451 kb on + strandat 1269.451 kb on + strandat 1269.451 kb on + strandat 1269.451 kb on + strandat 1269.451 kb on + strandat 1269.452 kb on - strandat 1269.452 kb on - strandat 1269.590 kb on - strandat 1269.667 kb on + strandat 1269.667 kb on + strandat 1269.667 kb on + strandat 1269.667 kb on + strandat 1269.667 kb on + strandat 1269.668 kb on - strandat 1269.668 kb on - strandat 1269.668 kb on - strandat 1269.668 kb on - strandat 1269.668 kb on - strandat 1269.779 kb on - strandat 1269.799 kb on - strandat 1269.872 kb on - strandat 1269.912 kb on + strandat 1269.913 kb on - strandat 1269.913 kb on - strandat 1269.913 kb on - strandat 1270.109 kb on - strand, within SMa2279at 1270.146 kb on + strand, within SMa2279at 1270.147 kb on - strand, within SMa2279at 1270.147 kb on - strand, within SMa2279at 1270.147 kb on - strand, within SMa2279at 1270.164 kb on - strand, within SMa2279at 1270.179 kb on + strand, within SMa2279at 1270.179 kb on + strand, within SMa2279at 1270.180 kb on - strand, within SMa2279at 1270.242 kb on + strand, within SMa2279at 1270.243 kb on - strand, within SMa2279at 1270.257 kb on + strand, within SMa2279at 1270.298 kb on + strand, within SMa2279at 1270.322 kb on + strand, within SMa2279at 1270.350 kb on - strandat 1270.406 kb on + strandat 1270.634 kb on + strand, within SMa2281at 1270.635 kb on - strand, within SMa2281at 1270.635 kb on - strand, within SMa2281at 1270.816 kb on - strandat 1270.851 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.952 kb on + strandat 1270.952 kb on + strandat 1270.953 kb on - strandat 1271.027 kb on + strandat 1271.124 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,269,231 + +0.7
1,269,321 + -0.0
1,269,322 - +0.1
1,269,378 + +0.5
1,269,378 + +0.4
1,269,379 - +0.5
1,269,379 - +0.6
1,269,382 + +0.4
1,269,385 - -0.6
1,269,451 + +0.9
1,269,451 + -0.5
1,269,451 + -0.4
1,269,451 + -0.1
1,269,451 + +1.4
1,269,451 + -0.1
1,269,452 - +0.1
1,269,452 - -0.0
1,269,590 - -0.9
1,269,667 + -1.1
1,269,667 + -0.5
1,269,667 + -0.7
1,269,667 + +0.1
1,269,667 + +0.8
1,269,668 - +0.3
1,269,668 - -1.1
1,269,668 - -0.2
1,269,668 - -0.6
1,269,668 - -0.2
1,269,779 - +0.3
1,269,799 - -0.1
1,269,872 - +0.4
1,269,912 + -0.4
1,269,913 - -0.1
1,269,913 - +0.8
1,269,913 - +0.5
1,270,109 - SMa2279 0.41 +0.1
1,270,146 + SMa2279 0.49 -0.5
1,270,147 - SMa2279 0.49 -0.8
1,270,147 - SMa2279 0.49 -0.4
1,270,147 - SMa2279 0.49 -0.3
1,270,164 - SMa2279 0.52 -0.1
1,270,179 + SMa2279 0.55 -1.2
1,270,179 + SMa2279 0.55 -0.3
1,270,180 - SMa2279 0.56 -2.6
1,270,242 + SMa2279 0.69 -0.4
1,270,243 - SMa2279 0.69 +0.3
1,270,257 + SMa2279 0.72 -0.3
1,270,298 + SMa2279 0.80 -1.0
1,270,322 + SMa2279 0.85 -0.5
1,270,350 - -0.4
1,270,406 + +1.9
1,270,634 + SMa2281 0.73 -0.9
1,270,635 - SMa2281 0.74 -0.1
1,270,635 - SMa2281 0.74 -0.6
1,270,816 - -0.2
1,270,851 - -0.6
1,270,928 - -1.1
1,270,928 - -0.0
1,270,928 - +0.9
1,270,928 - -0.6
1,270,928 - -0.5
1,270,952 + +0.6
1,270,952 + +0.2
1,270,953 - +0.1
1,271,027 + +0.7
1,271,124 + +0.8

Or see this region's nucleotide sequence