Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21474

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21472 and SM_b21473 are separated by 40 nucleotidesSM_b21473 and SM_b21474 overlap by 4 nucleotidesSM_b21474 and SM_b21475 are separated by 316 nucleotidesSM_b21475 and SM_b21476 overlap by 1 nucleotidesSM_b21476 and SM_b21477 overlap by 48 nucleotides SM_b21472: SM_b21472 - hypothetical protein, at 1,398,286 to 1,398,825 _b21472 SM_b21473: SM_b21473 - hypothetical protein, at 1,398,866 to 1,399,300 _b21473 SM_b21474: SM_b21474 - 3-ketoacyl-ACP reductase, at 1,399,297 to 1,400,079 _b21474 SM_b21475: SM_b21475 - hypothetical protein, at 1,400,396 to 1,400,599 _b21475 SM_b21476: SM_b21476 - hypothetical protein, at 1,400,599 to 1,400,946 _b21476 SM_b21477: SM_b21477 - reverse transcriptasematurase, at 1,400,899 to 1,402,077 _b21477 Position (kb) 1399 1400 1401Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1398.308 kb on + strandat 1398.309 kb on - strandat 1398.438 kb on + strand, within SM_b21472at 1398.452 kb on - strand, within SM_b21472at 1398.488 kb on + strand, within SM_b21472at 1398.489 kb on - strand, within SM_b21472at 1398.489 kb on - strand, within SM_b21472at 1398.495 kb on - strandat 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.686 kb on + strand, within SM_b21472at 1398.686 kb on + strand, within SM_b21472at 1398.686 kb on + strand, within SM_b21472at 1398.687 kb on - strand, within SM_b21472at 1398.768 kb on + strand, within SM_b21472at 1398.769 kb on - strandat 1398.928 kb on + strand, within SM_b21473at 1398.928 kb on + strand, within SM_b21473at 1398.944 kb on - strand, within SM_b21473at 1399.246 kb on - strand, within SM_b21473at 1399.445 kb on + strand, within SM_b21474at 1399.445 kb on + strand, within SM_b21474at 1399.445 kb on + strand, within SM_b21474at 1399.445 kb on + strand, within SM_b21474at 1399.446 kb on - strand, within SM_b21474at 1399.446 kb on - strand, within SM_b21474at 1399.446 kb on - strand, within SM_b21474at 1399.446 kb on - strand, within SM_b21474at 1399.530 kb on + strand, within SM_b21474at 1399.544 kb on + strand, within SM_b21474at 1399.544 kb on + strand, within SM_b21474at 1399.545 kb on - strand, within SM_b21474at 1399.765 kb on + strand, within SM_b21474at 1399.824 kb on + strand, within SM_b21474at 1399.950 kb on + strand, within SM_b21474at 1399.951 kb on - strand, within SM_b21474at 1399.951 kb on - strand, within SM_b21474at 1400.120 kb on + strandat 1400.120 kb on + strandat 1400.165 kb on - strandat 1400.165 kb on - strandat 1400.166 kb on + strandat 1400.167 kb on - strandat 1400.167 kb on - strandat 1400.167 kb on - strandat 1400.171 kb on + strandat 1400.171 kb on + strandat 1400.171 kb on + strandat 1400.210 kb on + strandat 1400.416 kb on + strandat 1400.557 kb on - strand, within SM_b21475at 1400.597 kb on + strandat 1400.597 kb on + strandat 1400.597 kb on + strandat 1400.657 kb on + strand, within SM_b21476at 1400.658 kb on - strand, within SM_b21476at 1400.697 kb on + strand, within SM_b21476at 1400.698 kb on - strand, within SM_b21476at 1400.715 kb on - strand, within SM_b21476

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,398,308 + +0.2
1,398,309 - +0.3
1,398,438 + SM_b21472 0.28 -0.2
1,398,452 - SM_b21472 0.31 +0.3
1,398,488 + SM_b21472 0.37 +0.0
1,398,489 - SM_b21472 0.38 -1.1
1,398,489 - SM_b21472 0.38 +0.9
1,398,495 - +2.9
1,398,682 + SM_b21472 0.73 +0.4
1,398,682 + SM_b21472 0.73 +0.6
1,398,682 + SM_b21472 0.73 -0.5
1,398,682 + SM_b21472 0.73 +0.1
1,398,682 + SM_b21472 0.73 +0.6
1,398,683 - SM_b21472 0.74 +0.3
1,398,683 - SM_b21472 0.74 +0.3
1,398,683 - SM_b21472 0.74 +0.3
1,398,683 - SM_b21472 0.74 +0.4
1,398,683 - SM_b21472 0.74 +0.3
1,398,686 + SM_b21472 0.74 -0.2
1,398,686 + SM_b21472 0.74 +0.0
1,398,686 + SM_b21472 0.74 +1.0
1,398,687 - SM_b21472 0.74 -0.0
1,398,768 + SM_b21472 0.89 +0.9
1,398,769 - -1.1
1,398,928 + SM_b21473 0.14 -0.5
1,398,928 + SM_b21473 0.14 +0.1
1,398,944 - SM_b21473 0.18 -0.4
1,399,246 - SM_b21473 0.87 +0.3
1,399,445 + SM_b21474 0.19 -0.5
1,399,445 + SM_b21474 0.19 -1.4
1,399,445 + SM_b21474 0.19 -1.7
1,399,445 + SM_b21474 0.19 -0.2
1,399,446 - SM_b21474 0.19 -0.1
1,399,446 - SM_b21474 0.19 -0.5
1,399,446 - SM_b21474 0.19 -0.8
1,399,446 - SM_b21474 0.19 -0.3
1,399,530 + SM_b21474 0.30 -0.3
1,399,544 + SM_b21474 0.32 -0.3
1,399,544 + SM_b21474 0.32 +0.2
1,399,545 - SM_b21474 0.32 +0.7
1,399,765 + SM_b21474 0.60 -0.2
1,399,824 + SM_b21474 0.67 -1.0
1,399,950 + SM_b21474 0.83 -0.4
1,399,951 - SM_b21474 0.84 +0.2
1,399,951 - SM_b21474 0.84 -2.3
1,400,120 + +0.0
1,400,120 + +0.5
1,400,165 - -1.3
1,400,165 - -0.6
1,400,166 + -1.3
1,400,167 - +0.2
1,400,167 - -0.1
1,400,167 - +0.9
1,400,171 + -0.5
1,400,171 + +0.3
1,400,171 + +0.7
1,400,210 + -0.2
1,400,416 + -0.4
1,400,557 - SM_b21475 0.79 -0.5
1,400,597 + +0.3
1,400,597 + +0.1
1,400,597 + -0.8
1,400,657 + SM_b21476 0.17 +0.6
1,400,658 - SM_b21476 0.17 +0.3
1,400,697 + SM_b21476 0.28 +0.7
1,400,698 - SM_b21476 0.28 +0.2
1,400,715 - SM_b21476 0.33 +0.0

Or see this region's nucleotide sequence