Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31310

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Thallium(I) acetate 0.001 mg/ml
2,396,338	+		RR42_RS31305	0.16	-0.5
2,396,522	+		RR42_RS31305	0.34	+0.5
2,396,523	-		RR42_RS31305	0.34	-1.4
2,396,536	+		RR42_RS31305	0.35	+0.5
2,396,536	+		RR42_RS31305	0.35	+0.1
2,396,536	+		RR42_RS31305	0.35	+0.6
2,396,537	-		RR42_RS31305	0.35	-0.7
2,396,537	-		RR42_RS31305	0.35	-0.7
2,396,537	-		RR42_RS31305	0.35	-0.2
2,396,804	+		RR42_RS31305	0.62	-1.2
2,396,804	+		RR42_RS31305	0.62	-1.5
2,396,805	-		RR42_RS31305	0.62	-1.0
2,396,808	-		RR42_RS31305	0.62	+1.3
2,396,859	-		RR42_RS31305	0.67	+0.3
2,396,859	-		RR42_RS31305	0.67	-0.5
2,396,929	+		RR42_RS31305	0.74	+1.9
2,396,929	+		RR42_RS31305	0.74	-0.5
2,396,929	+		RR42_RS31305	0.74	+0.1
2,396,930	-		RR42_RS31305	0.74	+0.9
2,396,930	-		RR42_RS31305	0.74	+0.0
2,397,169	+				+0.8
2,397,259	-				+0.6
2,397,259	-				-0.7
2,397,425	+				-3.2
2,397,425	+				-0.6
2,397,426	-				+0.9
2,397,494	+				+1.9
2,397,495	-				-0.1
2,397,559	+				-0.7
2,397,559	+				+0.8
2,397,560	-				-1.7
2,397,560	-				-0.1
2,397,828	+		RR42_RS31310	0.18	+0.3
2,397,829	-		RR42_RS31310	0.18	+1.3
2,397,872	+		RR42_RS31310	0.19	+0.3
2,397,873	-		RR42_RS31310	0.19	-0.8
2,397,910	-		RR42_RS31310	0.21	-0.2
2,397,971	+		RR42_RS31310	0.23	-0.3
2,397,972	-		RR42_RS31310	0.23	-0.3
2,397,972	-		RR42_RS31310	0.23	+0.0
2,398,089	+		RR42_RS31310	0.27	+2.1
2,398,090	-		RR42_RS31310	0.27	-2.2
2,398,145	+		RR42_RS31310	0.29	-0.5
2,398,168	-		RR42_RS31310	0.30	-0.8
2,398,168	-		RR42_RS31310	0.30	-0.2
2,398,168	-		RR42_RS31310	0.30	-0.7
2,398,237	-		RR42_RS31310	0.32	-0.7
2,398,259	+		RR42_RS31310	0.33	+0.6
2,398,259	+		RR42_RS31310	0.33	-0.8
2,398,259	+		RR42_RS31310	0.33	-1.5
2,398,259	+		RR42_RS31310	0.33	-0.9
2,398,259	+		RR42_RS31310	0.33	-1.0
2,398,259	+		RR42_RS31310	0.33	+0.1
2,398,259	+		RR42_RS31310	0.33	+0.3
2,398,260	-		RR42_RS31310	0.33	-0.8
2,398,260	-		RR42_RS31310	0.33	+0.6
2,398,260	-		RR42_RS31310	0.33	+0.8
2,398,260	-		RR42_RS31310	0.33	-0.0
2,398,391	+		RR42_RS31310	0.38	-1.2
2,398,391	+		RR42_RS31310	0.38	-0.4
2,398,392	-		RR42_RS31310	0.38	+0.1
2,398,401	-		RR42_RS31310	0.38	-0.3
2,398,401	-		RR42_RS31310	0.38	-1.1
2,398,401	-		RR42_RS31310	0.38	-1.3
2,398,401	-		RR42_RS31310	0.38	+0.9
2,398,599	-		RR42_RS31310	0.45	-0.4
2,398,613	+		RR42_RS31310	0.45	-0.3
2,398,613	+		RR42_RS31310	0.45	-0.5
2,398,613	+		RR42_RS31310	0.45	+0.3
2,398,697	+		RR42_RS31310	0.48	+3.3
2,399,058	+		RR42_RS31310	0.61	-0.8
2,399,059	-		RR42_RS31310	0.61	+1.3
2,399,099	+		RR42_RS31310	0.63	-1.0
2,399,099	+		RR42_RS31310	0.63	-0.5
2,399,099	+		RR42_RS31310	0.63	+0.7
2,399,099	+		RR42_RS31310	0.63	-0.4
2,399,100	-		RR42_RS31310	0.63	-0.2
2,399,156	+		RR42_RS31310	0.65	+0.6
2,399,157	-		RR42_RS31310	0.65	-0.4
2,399,157	-		RR42_RS31310	0.65	-0.2
2,399,328	-		RR42_RS31310	0.71	+0.3
2,399,339	+		RR42_RS31310	0.71	-0.3
2,399,423	+		RR42_RS31310	0.74	+0.2
2,399,423	+		RR42_RS31310	0.74	+1.3
2,399,424	-		RR42_RS31310	0.74	+0.7
2,399,424	-		RR42_RS31310	0.74	+0.7
2,399,424	-		RR42_RS31310	0.74	+0.4
2,399,424	-		RR42_RS31310	0.74	+0.0
2,399,450	+		RR42_RS31310	0.75	+1.5
2,399,458	+		RR42_RS31310	0.75	-0.4
2,399,459	-		RR42_RS31310	0.75	-1.2
2,399,813	+		RR42_RS31310	0.88	+0.6
2,399,814	-		RR42_RS31310	0.88	-0.4
2,400,005	+				+0.3
2,400,006	-				-1.2
2,400,175	+				-0.1
2,400,176	-				-0.7
2,400,199	+				-1.1
2,400,199	+				+1.3
2,400,199	+				-0.5
2,400,200	-				+1.0
2,400,200	-				+1.3
2,400,200	-				-0.2
2,400,469	+		RR42_RS31315	0.17	-1.2
2,400,483	-		RR42_RS31315	0.18	-1.1
2,400,550	+		RR42_RS31315	0.22	-0.4
2,400,556	+		RR42_RS31315	0.22	+0.4
2,400,556	+		RR42_RS31315	0.22	+0.9
2,400,557	-		RR42_RS31315	0.22	-1.0
2,400,589	+		RR42_RS31315	0.24	-0.8
2,400,885	-		RR42_RS31315	0.41	-0.9
2,400,885	-		RR42_RS31315	0.41	-0.6
2,400,885	-		RR42_RS31315	0.41	-0.0
2,400,886	+				-0.2
2,400,886	+		RR42_RS31315	0.41	+0.3
2,400,887	-		RR42_RS31315	0.42	+0.4
2,400,887	-		RR42_RS31315	0.42	-0.6
2,400,887	-		RR42_RS31315	0.42	+1.5
2,401,006	+		RR42_RS31315	0.48	+1.3
2,401,006	+		RR42_RS31315	0.48	+0.9
2,401,007	-		RR42_RS31315	0.49	-0.7
2,401,012	+		RR42_RS31315	0.49	-0.5
2,401,012	+		RR42_RS31315	0.49	+0.3
2,401,012	+		RR42_RS31315	0.49	-0.1
2,401,013	-		RR42_RS31315	0.49	-0.0
2,401,013	-		RR42_RS31315	0.49	+0.0
2,401,013	-		RR42_RS31315	0.49	-0.5
2,401,013	-		RR42_RS31315	0.49	+0.7
2,401,013	-		RR42_RS31315	0.49	+0.7
2,401,013	-		RR42_RS31315	0.49	-0.5
2,401,087	+		RR42_RS31315	0.53	+0.4
2,401,106	+		RR42_RS31315	0.54	-0.2