Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29390

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Thallium(I) acetate 0.001 mg/ml
1,946,172	+		RR42_RS29385	0.67	-0.1
1,946,173	-		RR42_RS29385	0.67	-0.0
1,946,173	-		RR42_RS29385	0.67	+0.1
1,946,173	-		RR42_RS29385	0.67	-0.0
1,946,173	-		RR42_RS29385	0.67	+1.2
1,946,173	-		RR42_RS29385	0.67	-0.3
1,946,173	-		RR42_RS29385	0.67	-0.1
1,946,173	-		RR42_RS29385	0.67	-0.9
1,946,292	+		RR42_RS29385	0.74	+0.5
1,946,293	-		RR42_RS29385	0.74	-0.4
1,946,293	-		RR42_RS29385	0.74	-0.1
1,946,293	-		RR42_RS29385	0.74	-0.0
1,946,424	+		RR42_RS29385	0.83	+0.1
1,946,425	-		RR42_RS29385	0.83	-0.3
1,946,496	+		RR42_RS29385	0.87	-1.5
1,946,497	-		RR42_RS29385	0.87	+0.3
1,946,497	-		RR42_RS29385	0.87	-0.6
1,946,497	-		RR42_RS29385	0.87	-2.9
1,946,528	+		RR42_RS29385	0.89	+0.3
1,946,528	+		RR42_RS29385	0.89	-0.4
1,946,528	+		RR42_RS29385	0.89	+0.4
1,946,586	+				+0.4
1,946,586	+				+0.8
1,946,586	+				+0.4
1,946,586	+				-0.6
1,946,587	-				-0.3
1,946,680	+				-0.0
1,946,777	-				+0.9
1,946,778	+				-0.3
1,946,779	-				-0.6
1,946,804	+				-0.6
1,946,823	+				+0.1
1,946,823	+				-1.2
1,946,823	+				-0.1
1,946,824	-				-0.3
1,946,824	-				-2.0
1,946,824	-				-1.5
1,946,824	-				+0.1
1,946,824	-				-0.6
1,946,824	-				-0.5
1,946,825	+				-0.7
1,946,825	+				-0.4
1,946,825	+				-0.5
1,946,825	+				-1.1
1,946,826	-				-0.3
1,946,826	-				-0.6
1,946,826	-				-0.5
1,946,826	-				-0.0
1,946,826	-				+0.6
1,946,826	-				-0.5
1,946,826	-				-1.1
1,946,890	+				-1.0
1,946,890	+				-1.0
1,947,012	+				-0.3
1,947,086	+				+0.1
1,947,086	+				+1.2
1,947,086	+				+0.4
1,947,101	+				+0.1
1,947,437	+		RR42_RS29390	0.25	-1.0
1,947,438	-		RR42_RS29390	0.25	-1.8
1,947,566	+		RR42_RS29390	0.32	-0.4
1,947,567	-		RR42_RS29390	0.32	+0.5
1,947,567	-		RR42_RS29390	0.32	-0.9
1,947,782	+		RR42_RS29390	0.44	-0.1
1,947,783	-		RR42_RS29390	0.44	+0.2
1,947,789	+		RR42_RS29390	0.44	-0.6
1,947,790	-		RR42_RS29390	0.45	+0.2
1,947,806	+		RR42_RS29390	0.45	-1.4
1,947,806	+		RR42_RS29390	0.45	-0.4
1,947,807	-		RR42_RS29390	0.45	+0.6
1,947,914	+		RR42_RS29390	0.51	-0.6
1,947,914	+		RR42_RS29390	0.51	-0.7
1,947,914	+		RR42_RS29390	0.51	+0.8
1,947,914	+		RR42_RS29390	0.51	-0.3
1,947,914	+		RR42_RS29390	0.51	-0.9
1,947,914	+		RR42_RS29390	0.51	-1.1
1,947,914	+		RR42_RS29390	0.51	-0.7
1,947,915	-		RR42_RS29390	0.51	+0.2
1,947,932	+		RR42_RS29390	0.52	+0.1
1,947,932	+		RR42_RS29390	0.52	+0.4
1,947,932	+		RR42_RS29390	0.52	+0.4
1,947,932	+		RR42_RS29390	0.52	-0.3
1,947,932	+		RR42_RS29390	0.52	+0.3
1,947,932	+		RR42_RS29390	0.52	-1.8
1,947,933	-		RR42_RS29390	0.52	+1.2
1,947,933	-		RR42_RS29390	0.52	+0.8
1,947,933	-		RR42_RS29390	0.52	-2.4
1,947,933	-		RR42_RS29390	0.52	+1.7
1,947,933	-		RR42_RS29390	0.52	-0.0
1,947,933	-		RR42_RS29390	0.52	-1.8
1,948,067	-		RR42_RS29390	0.60	-0.4
1,948,502	-		RR42_RS29390	0.83	-0.1
1,948,556	+		RR42_RS29390	0.86	-0.6
1,948,556	+		RR42_RS29390	0.86	-0.0
1,948,641	-				-0.8
1,949,138	+				-1.0
1,949,139	-				-0.3
1,949,139	-				-0.4
1,949,139	-				+0.1
1,949,192	+		RR42_RS29395	0.15	+0.7
1,949,192	+		RR42_RS29395	0.15	+1.4
1,949,192	+		RR42_RS29395	0.15	-1.1
1,949,192	+		RR42_RS29395	0.15	+0.0
1,949,192	+		RR42_RS29395	0.15	+0.2
1,949,193	-		RR42_RS29395	0.15	-0.4
1,949,193	-		RR42_RS29395	0.15	+1.2
1,949,193	-		RR42_RS29395	0.15	-0.4
1,949,193	-		RR42_RS29395	0.15	+0.6
1,949,193	-		RR42_RS29395	0.15	-0.5
1,949,344	+		RR42_RS29395	0.34	-0.4
1,949,344	+		RR42_RS29395	0.34	+0.6
1,949,344	+		RR42_RS29395	0.34	-0.4
1,949,345	-		RR42_RS29395	0.35	-1.0
1,949,345	-		RR42_RS29395	0.35	-0.3
1,949,345	-		RR42_RS29395	0.35	+0.4
1,949,345	-		RR42_RS29395	0.35	-0.3
1,949,702	+		RR42_RS29395	0.81	-0.8
1,949,702	+		RR42_RS29395	0.81	-1.0
1,949,703	-		RR42_RS29395	0.81	-0.5
1,949,703	-		RR42_RS29395	0.81	+0.6
1,949,703	-		RR42_RS29395	0.81	+0.1
1,949,703	-		RR42_RS29395	0.81	+0.8
1,949,703	-		RR42_RS29395	0.81	+1.0
1,949,703	-		RR42_RS29395	0.81	-0.4
1,949,792	+				-1.5