Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28970

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28960 and RR42_RS28965 are separated by 55 nucleotidesRR42_RS28965 and RR42_RS28970 are separated by 61 nucleotidesRR42_RS28970 and RR42_RS28975 are separated by 15 nucleotidesRR42_RS28975 and RR42_RS28980 are separated by 180 nucleotides RR42_RS28960: RR42_RS28960 - acyl-CoA hydrolase, at 1,855,699 to 1,856,184 _RS28960 RR42_RS28965: RR42_RS28965 - hypothetical protein, at 1,856,240 to 1,856,707 _RS28965 RR42_RS28970: RR42_RS28970 - 3-oxoacyl-ACP reductase, at 1,856,769 to 1,857,527 _RS28970 RR42_RS28975: RR42_RS28975 - acid phosphatase, at 1,857,543 to 1,858,343 _RS28975 RR42_RS28980: RR42_RS28980 - fatty acid--CoA ligase, at 1,858,524 to 1,860,266 _RS28980 Position (kb) 1856 1857 1858Strain fitness (log2 ratio) -2 -1 0 1 2at 1855.795 kb on + strand, within RR42_RS28960at 1855.795 kb on + strand, within RR42_RS28960at 1855.796 kb on - strand, within RR42_RS28960at 1855.813 kb on + strand, within RR42_RS28960at 1855.813 kb on + strand, within RR42_RS28960at 1855.813 kb on + strand, within RR42_RS28960at 1855.813 kb on + strand, within RR42_RS28960at 1855.813 kb on + strand, within RR42_RS28960at 1855.843 kb on + strand, within RR42_RS28960at 1855.980 kb on + strand, within RR42_RS28960at 1856.018 kb on - strand, within RR42_RS28960at 1856.018 kb on - strand, within RR42_RS28960at 1856.018 kb on - strand, within RR42_RS28960at 1856.399 kb on + strand, within RR42_RS28965at 1856.400 kb on - strand, within RR42_RS28965at 1856.400 kb on - strand, within RR42_RS28965at 1856.400 kb on - strand, within RR42_RS28965at 1856.602 kb on + strand, within RR42_RS28965at 1856.602 kb on + strand, within RR42_RS28965at 1856.603 kb on - strandat 1856.603 kb on - strand, within RR42_RS28965at 1856.613 kb on - strand, within RR42_RS28965at 1856.621 kb on + strand, within RR42_RS28965at 1856.621 kb on + strand, within RR42_RS28965at 1856.622 kb on - strand, within RR42_RS28965at 1856.622 kb on - strand, within RR42_RS28965at 1856.656 kb on + strand, within RR42_RS28965at 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.706 kb on - strandat 1856.706 kb on - strandat 1856.706 kb on - strandat 1856.879 kb on + strand, within RR42_RS28970at 1857.237 kb on + strand, within RR42_RS28970at 1857.238 kb on - strand, within RR42_RS28970at 1857.238 kb on - strand, within RR42_RS28970at 1857.238 kb on - strand, within RR42_RS28970at 1857.325 kb on - strand, within RR42_RS28970at 1857.348 kb on - strand, within RR42_RS28970at 1857.544 kb on + strandat 1857.544 kb on + strandat 1857.544 kb on + strandat 1857.545 kb on - strandat 1857.757 kb on + strand, within RR42_RS28975at 1857.757 kb on + strand, within RR42_RS28975at 1857.758 kb on - strand, within RR42_RS28975at 1857.758 kb on - strand, within RR42_RS28975at 1857.842 kb on + strand, within RR42_RS28975at 1857.857 kb on - strandat 1857.940 kb on + strand, within RR42_RS28975at 1857.940 kb on + strand, within RR42_RS28975at 1857.941 kb on - strand, within RR42_RS28975at 1857.941 kb on - strand, within RR42_RS28975at 1857.967 kb on - strand, within RR42_RS28975at 1858.004 kb on - strand, within RR42_RS28975at 1858.260 kb on + strand, within RR42_RS28975

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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1,855,795 + RR42_RS28960 0.20 -1.0
1,855,795 + RR42_RS28960 0.20 +0.1
1,855,796 - RR42_RS28960 0.20 +0.2
1,855,813 + RR42_RS28960 0.23 +0.3
1,855,813 + RR42_RS28960 0.23 +0.3
1,855,813 + RR42_RS28960 0.23 -1.0
1,855,813 + RR42_RS28960 0.23 +0.3
1,855,813 + RR42_RS28960 0.23 -0.0
1,855,843 + RR42_RS28960 0.30 +0.4
1,855,980 + RR42_RS28960 0.58 -0.4
1,856,018 - RR42_RS28960 0.66 +0.8
1,856,018 - RR42_RS28960 0.66 -0.2
1,856,018 - RR42_RS28960 0.66 +1.4
1,856,399 + RR42_RS28965 0.34 +0.2
1,856,400 - RR42_RS28965 0.34 +0.6
1,856,400 - RR42_RS28965 0.34 -0.4
1,856,400 - RR42_RS28965 0.34 +0.2
1,856,602 + RR42_RS28965 0.77 -0.8
1,856,602 + RR42_RS28965 0.77 -0.4
1,856,603 - +2.0
1,856,603 - RR42_RS28965 0.78 -2.3
1,856,613 - RR42_RS28965 0.80 +0.0
1,856,621 + RR42_RS28965 0.81 -0.4
1,856,621 + RR42_RS28965 0.81 -2.0
1,856,622 - RR42_RS28965 0.82 -0.5
1,856,622 - RR42_RS28965 0.82 -0.8
1,856,656 + RR42_RS28965 0.89 -0.9
1,856,705 + +0.6
1,856,705 + -0.6
1,856,705 + -0.5
1,856,705 + -0.1
1,856,705 + +0.7
1,856,705 + +0.2
1,856,705 + -1.1
1,856,706 - -0.4
1,856,706 - -0.8
1,856,706 - -0.4
1,856,879 + RR42_RS28970 0.14 -1.2
1,857,237 + RR42_RS28970 0.62 -1.4
1,857,238 - RR42_RS28970 0.62 -0.1
1,857,238 - RR42_RS28970 0.62 -0.4
1,857,238 - RR42_RS28970 0.62 -0.4
1,857,325 - RR42_RS28970 0.73 -1.5
1,857,348 - RR42_RS28970 0.76 +0.1
1,857,544 + -0.4
1,857,544 + -0.8
1,857,544 + -0.2
1,857,545 - +0.4
1,857,757 + RR42_RS28975 0.27 +0.8
1,857,757 + RR42_RS28975 0.27 -0.5
1,857,758 - RR42_RS28975 0.27 +0.4
1,857,758 - RR42_RS28975 0.27 +0.2
1,857,842 + RR42_RS28975 0.37 -0.1
1,857,857 - +1.2
1,857,940 + RR42_RS28975 0.50 +0.5
1,857,940 + RR42_RS28975 0.50 +0.1
1,857,941 - RR42_RS28975 0.50 +0.1
1,857,941 - RR42_RS28975 0.50 -0.4
1,857,967 - RR42_RS28975 0.53 +0.5
1,858,004 - RR42_RS28975 0.58 -0.4
1,858,260 + RR42_RS28975 0.90 +0.7

Or see this region's nucleotide sequence