Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25645
Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Thallium(I) acetate 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,096,302 | + | RR42_RS25640 | 0.24 | -0.3 | |
1,096,302 | + | RR42_RS25640 | 0.24 | +1.0 | |
1,097,089 | + | -2.7 | |||
1,097,089 | + | -0.6 | |||
1,097,089 | + | -0.9 | |||
1,097,097 | - | -0.6 | |||
1,097,250 | + | RR42_RS25645 | 0.79 | -2.8 | |
1,097,250 | + | RR42_RS25645 | 0.79 | +0.4 | |
1,097,251 | - | RR42_RS25645 | 0.80 | +0.0 | |
1,097,251 | - | RR42_RS25645 | 0.80 | -2.6 | |
1,097,294 | + | -0.3 | |||
1,097,295 | - | -1.0 | |||
1,097,295 | - | -0.8 | |||
1,097,295 | - | +0.8 | |||
1,097,338 | + | -0.7 | |||
1,097,338 | + | -0.0 | |||
1,097,338 | + | +0.2 | |||
1,097,339 | - | -0.6 | |||
1,097,339 | - | -0.5 | |||
1,097,460 | - | -1.9 | |||
1,097,610 | - | -0.0 | |||
1,097,610 | - | -0.7 | |||
1,097,610 | - | -1.0 | |||
1,097,613 | - | -1.3 | |||
1,097,613 | - | +0.4 | |||
1,097,704 | + | RR42_RS25650 | 0.49 | +0.8 | |
1,097,704 | + | RR42_RS25650 | 0.49 | +1.4 | |
1,097,798 | + | +0.8 | |||
1,097,799 | - | +0.6 | |||
1,097,799 | - | +0.1 | |||
1,097,901 | + | -0.5 | |||
1,097,908 | + | -0.2 | |||
1,097,908 | + | +0.3 | |||
1,097,989 | - | -0.2 | |||
1,098,000 | - | -0.4 | |||
1,098,007 | + | -0.6 | |||
1,098,059 | - | +0.5 | |||
1,098,095 | - | -0.8 |
Or see this region's nucleotide sequence