Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23800 and RR42_RS23805 are separated by 407 nucleotides RR42_RS23805 and RR42_RS23810 are separated by 30 nucleotides
RR42_RS23800: RR42_RS23800 - hypothetical protein, at 666,429 to 666,728
_RS23800
RR42_RS23805: RR42_RS23805 - hypothetical protein, at 667,136 to 669,109
_RS23805
RR42_RS23810: RR42_RS23810 - hypothetical protein, at 669,140 to 671,086
_RS23810
Position (kb) 667
668
669
670 Strain fitness (log2 ratio) -2
-1
0
1
2 at 666.151 kb on + strand at 666.152 kb on - strand at 666.152 kb on - strand at 666.169 kb on + strand at 666.177 kb on - strand at 666.208 kb on + strand at 666.282 kb on - strand at 666.282 kb on - strand at 666.282 kb on - strand at 666.282 kb on - strand at 666.340 kb on + strand at 666.340 kb on + strand at 666.340 kb on + strand at 666.360 kb on + strand at 666.361 kb on - strand at 666.376 kb on + strand at 666.377 kb on - strand at 666.436 kb on + strand at 666.437 kb on - strand at 666.459 kb on + strand, within RR42_RS23800 at 666.459 kb on + strand, within RR42_RS23800 at 666.460 kb on - strand, within RR42_RS23800 at 666.460 kb on - strand, within RR42_RS23800 at 666.491 kb on + strand, within RR42_RS23800 at 666.524 kb on - strand, within RR42_RS23800 at 666.524 kb on - strand, within RR42_RS23800 at 666.524 kb on - strand, within RR42_RS23800 at 666.528 kb on + strand, within RR42_RS23800 at 666.529 kb on - strand, within RR42_RS23800 at 666.529 kb on - strand, within RR42_RS23800 at 666.529 kb on - strand, within RR42_RS23800 at 666.577 kb on + strand, within RR42_RS23800 at 666.577 kb on + strand, within RR42_RS23800 at 666.577 kb on + strand, within RR42_RS23800 at 666.578 kb on - strand, within RR42_RS23800 at 666.592 kb on + strand, within RR42_RS23800 at 666.593 kb on - strand, within RR42_RS23800 at 666.685 kb on - strand, within RR42_RS23800 at 666.706 kb on - strand at 666.706 kb on - strand at 666.878 kb on - strand at 666.901 kb on - strand at 666.962 kb on - strand at 666.962 kb on - strand at 666.970 kb on + strand at 666.971 kb on - strand at 667.000 kb on + strand at 667.000 kb on + strand at 667.001 kb on - strand at 667.041 kb on + strand at 667.041 kb on + strand at 667.042 kb on - strand at 667.042 kb on - strand at 667.042 kb on - strand at 667.051 kb on + strand at 667.051 kb on + strand at 667.051 kb on + strand at 667.052 kb on - strand at 667.052 kb on - strand at 667.052 kb on - strand at 667.057 kb on + strand at 667.057 kb on + strand at 667.057 kb on + strand at 667.058 kb on - strand at 667.058 kb on - strand at 667.058 kb on - strand at 667.058 kb on - strand at 667.058 kb on - strand at 667.288 kb on - strand at 667.288 kb on - strand at 667.288 kb on - strand at 667.513 kb on + strand, within RR42_RS23805 at 667.513 kb on + strand, within RR42_RS23805 at 667.659 kb on - strand, within RR42_RS23805 at 667.736 kb on - strand, within RR42_RS23805 at 667.765 kb on - strand, within RR42_RS23805 at 667.765 kb on - strand, within RR42_RS23805 at 667.765 kb on - strand, within RR42_RS23805 at 667.857 kb on + strand, within RR42_RS23805 at 667.857 kb on + strand, within RR42_RS23805 at 667.857 kb on + strand, within RR42_RS23805 at 667.858 kb on - strand, within RR42_RS23805 at 667.858 kb on - strand, within RR42_RS23805 at 667.926 kb on + strand, within RR42_RS23805 at 668.011 kb on - strand, within RR42_RS23805 at 668.170 kb on - strand, within RR42_RS23805 at 668.170 kb on - strand, within RR42_RS23805 at 668.227 kb on - strand, within RR42_RS23805 at 668.227 kb on - strand, within RR42_RS23805 at 668.266 kb on - strand, within RR42_RS23805 at 668.266 kb on - strand, within RR42_RS23805 at 668.266 kb on - strand, within RR42_RS23805 at 668.266 kb on - strand, within RR42_RS23805 at 668.266 kb on - strand, within RR42_RS23805 at 668.277 kb on + strand, within RR42_RS23805 at 668.277 kb on + strand, within RR42_RS23805 at 668.278 kb on - strand, within RR42_RS23805 at 668.436 kb on + strand, within RR42_RS23805 at 668.436 kb on + strand, within RR42_RS23805 at 668.514 kb on + strand, within RR42_RS23805 at 668.514 kb on + strand, within RR42_RS23805 at 668.514 kb on + strand, within RR42_RS23805 at 668.515 kb on - strand, within RR42_RS23805 at 668.647 kb on + strand, within RR42_RS23805 at 668.648 kb on - strand, within RR42_RS23805 at 668.648 kb on - strand, within RR42_RS23805 at 668.760 kb on + strand, within RR42_RS23805 at 668.760 kb on + strand, within RR42_RS23805 at 668.761 kb on - strand, within RR42_RS23805 at 668.761 kb on - strand, within RR42_RS23805 at 668.848 kb on + strand, within RR42_RS23805 at 668.848 kb on + strand, within RR42_RS23805 at 668.849 kb on - strand, within RR42_RS23805 at 668.862 kb on - strand, within RR42_RS23805 at 668.884 kb on - strand, within RR42_RS23805 at 668.884 kb on - strand, within RR42_RS23805 at 668.961 kb on + strand at 668.962 kb on - strand at 669.086 kb on + strand at 669.103 kb on - strand at 669.103 kb on - strand at 669.181 kb on - strand at 669.215 kb on - strand at 669.300 kb on + strand at 669.301 kb on - strand at 669.361 kb on - strand, within RR42_RS23810 at 669.482 kb on + strand, within RR42_RS23810 at 669.482 kb on + strand, within RR42_RS23810 at 669.483 kb on - strand, within RR42_RS23810 at 669.520 kb on + strand, within RR42_RS23810 at 669.520 kb on + strand, within RR42_RS23810 at 669.521 kb on - strand, within RR42_RS23810
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml remove 666,151 + -0.6 666,152 - -0.9 666,152 - +1.2 666,169 + -0.0 666,177 - -0.0 666,208 + -0.9 666,282 - -2.0 666,282 - -2.5 666,282 - +1.2 666,282 - +0.9 666,340 + -0.3 666,340 + +0.7 666,340 + -0.1 666,360 + -0.0 666,361 - +0.2 666,376 + +0.8 666,377 - -0.3 666,436 + -0.5 666,437 - -0.2 666,459 + RR42_RS23800 0.10 +0.7 666,459 + RR42_RS23800 0.10 -0.3 666,460 - RR42_RS23800 0.10 -1.3 666,460 - RR42_RS23800 0.10 -0.6 666,491 + RR42_RS23800 0.21 -0.8 666,524 - RR42_RS23800 0.32 +0.8 666,524 - RR42_RS23800 0.32 +0.5 666,524 - RR42_RS23800 0.32 -1.0 666,528 + RR42_RS23800 0.33 -1.0 666,529 - RR42_RS23800 0.33 +0.1 666,529 - RR42_RS23800 0.33 -2.0 666,529 - RR42_RS23800 0.33 +0.0 666,577 + RR42_RS23800 0.49 -1.6 666,577 + RR42_RS23800 0.49 -1.2 666,577 + RR42_RS23800 0.49 +2.1 666,578 - RR42_RS23800 0.50 -0.1 666,592 + RR42_RS23800 0.54 +1.1 666,593 - RR42_RS23800 0.55 -0.6 666,685 - RR42_RS23800 0.85 -0.3 666,706 - -1.2 666,706 - -0.4 666,878 - -0.3 666,901 - -0.5 666,962 - -0.9 666,962 - -0.9 666,970 + -0.5 666,971 - +0.6 667,000 + +1.3 667,000 + +0.8 667,001 - -0.3 667,041 + +0.2 667,041 + -0.3 667,042 - -0.1 667,042 - -0.2 667,042 - +0.5 667,051 + +1.4 667,051 + -0.2 667,051 + +0.1 667,052 - -0.0 667,052 - +0.4 667,052 - -0.6 667,057 + +0.0 667,057 + -0.2 667,057 + +0.6 667,058 - +0.0 667,058 - +0.4 667,058 - -0.4 667,058 - -2.2 667,058 - +0.4 667,288 - -0.6 667,288 - -0.1 667,288 - +0.0 667,513 + RR42_RS23805 0.19 -0.9 667,513 + RR42_RS23805 0.19 -1.0 667,659 - RR42_RS23805 0.26 +0.7 667,736 - RR42_RS23805 0.30 -0.3 667,765 - RR42_RS23805 0.32 -0.6 667,765 - RR42_RS23805 0.32 -0.7 667,765 - RR42_RS23805 0.32 +0.7 667,857 + RR42_RS23805 0.37 -2.0 667,857 + RR42_RS23805 0.37 +0.4 667,857 + RR42_RS23805 0.37 +1.3 667,858 - RR42_RS23805 0.37 +0.1 667,858 - RR42_RS23805 0.37 +0.9 667,926 + RR42_RS23805 0.40 +1.7 668,011 - RR42_RS23805 0.44 +0.1 668,170 - RR42_RS23805 0.52 -0.2 668,170 - RR42_RS23805 0.52 +0.4 668,227 - RR42_RS23805 0.55 +0.6 668,227 - RR42_RS23805 0.55 +0.8 668,266 - RR42_RS23805 0.57 +0.3 668,266 - RR42_RS23805 0.57 +0.7 668,266 - RR42_RS23805 0.57 +0.7 668,266 - RR42_RS23805 0.57 +0.1 668,266 - RR42_RS23805 0.57 +0.1 668,277 + RR42_RS23805 0.58 +0.1 668,277 + RR42_RS23805 0.58 -0.4 668,278 - RR42_RS23805 0.58 -1.3 668,436 + RR42_RS23805 0.66 -0.3 668,436 + RR42_RS23805 0.66 -0.3 668,514 + RR42_RS23805 0.70 -0.3 668,514 + RR42_RS23805 0.70 -0.5 668,514 + RR42_RS23805 0.70 +0.6 668,515 - RR42_RS23805 0.70 -1.3 668,647 + RR42_RS23805 0.77 +0.3 668,648 - RR42_RS23805 0.77 -0.2 668,648 - RR42_RS23805 0.77 -0.5 668,760 + RR42_RS23805 0.82 +0.2 668,760 + RR42_RS23805 0.82 -1.2 668,761 - RR42_RS23805 0.82 -0.7 668,761 - RR42_RS23805 0.82 -0.0 668,848 + RR42_RS23805 0.87 +0.4 668,848 + RR42_RS23805 0.87 +0.6 668,849 - RR42_RS23805 0.87 +1.0 668,862 - RR42_RS23805 0.87 -0.2 668,884 - RR42_RS23805 0.89 +0.1 668,884 - RR42_RS23805 0.89 -0.1 668,961 + +0.1 668,962 - -1.0 669,086 + -0.3 669,103 - +0.2 669,103 - -0.0 669,181 - -0.9 669,215 - +0.3 669,300 + -0.7 669,301 - +0.1 669,361 - RR42_RS23810 0.11 +0.1 669,482 + RR42_RS23810 0.18 +0.3 669,482 + RR42_RS23810 0.18 -0.3 669,483 - RR42_RS23810 0.18 -0.9 669,520 + RR42_RS23810 0.20 +0.3 669,520 + RR42_RS23810 0.20 -0.2 669,521 - RR42_RS23810 0.20 +0.3
Or see this region's nucleotide sequence