Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23310 and RR42_RS23315 overlap by 4 nucleotides RR42_RS23315 and RR42_RS23320 are separated by 84 nucleotides
RR42_RS23310: RR42_RS23310 - cytochrome B6, at 559,526 to 560,863
_RS23310
RR42_RS23315: RR42_RS23315 - serine/threonine protein phosphatase, at 560,860 to 562,416
_RS23315
RR42_RS23320: RR42_RS23320 - hypothetical protein, at 562,501 to 564,165
_RS23320
Position (kb) 560
561
562
563 Strain fitness (log2 ratio) -2
-1
0
1
2 at 560.127 kb on + strand, within RR42_RS23310 at 560.176 kb on - strand, within RR42_RS23310 at 560.406 kb on + strand, within RR42_RS23310 at 560.428 kb on - strand, within RR42_RS23310 at 560.428 kb on - strand, within RR42_RS23310 at 560.448 kb on + strand, within RR42_RS23310 at 560.449 kb on - strand, within RR42_RS23310 at 560.449 kb on - strand, within RR42_RS23310 at 560.457 kb on + strand, within RR42_RS23310 at 560.457 kb on + strand, within RR42_RS23310 at 560.457 kb on + strand, within RR42_RS23310 at 560.458 kb on - strand, within RR42_RS23310 at 560.899 kb on - strand at 560.944 kb on - strand at 560.945 kb on + strand at 560.945 kb on + strand at 560.945 kb on + strand at 561.085 kb on + strand, within RR42_RS23315 at 561.207 kb on - strand, within RR42_RS23315 at 561.356 kb on - strand, within RR42_RS23315 at 561.488 kb on + strand, within RR42_RS23315 at 561.489 kb on - strand, within RR42_RS23315 at 561.843 kb on - strand, within RR42_RS23315 at 562.155 kb on - strand, within RR42_RS23315 at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.421 kb on - strand at 562.421 kb on - strand at 562.421 kb on - strand at 562.421 kb on - strand at 562.421 kb on - strand at 562.422 kb on + strand at 562.422 kb on + strand at 562.422 kb on + strand at 562.422 kb on + strand at 562.423 kb on - strand at 562.423 kb on - strand at 562.423 kb on - strand at 562.433 kb on + strand at 562.433 kb on + strand at 562.456 kb on + strand at 562.459 kb on - strand at 562.459 kb on - strand at 562.489 kb on + strand at 562.489 kb on + strand at 562.489 kb on + strand at 562.490 kb on - strand at 562.490 kb on - strand at 562.490 kb on - strand at 562.754 kb on + strand, within RR42_RS23320 at 562.754 kb on + strand, within RR42_RS23320 at 563.168 kb on + strand, within RR42_RS23320 at 563.168 kb on + strand, within RR42_RS23320 at 563.169 kb on - strand, within RR42_RS23320 at 563.169 kb on - strand, within RR42_RS23320 at 563.169 kb on - strand, within RR42_RS23320 at 563.319 kb on - strand, within RR42_RS23320
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml remove 560,127 + RR42_RS23310 0.45 +0.3 560,176 - RR42_RS23310 0.49 -0.4 560,406 + RR42_RS23310 0.66 -0.5 560,428 - RR42_RS23310 0.67 -0.1 560,428 - RR42_RS23310 0.67 -1.2 560,448 + RR42_RS23310 0.69 -0.5 560,449 - RR42_RS23310 0.69 -0.8 560,449 - RR42_RS23310 0.69 +0.1 560,457 + RR42_RS23310 0.70 -1.1 560,457 + RR42_RS23310 0.70 -0.3 560,457 + RR42_RS23310 0.70 -1.2 560,458 - RR42_RS23310 0.70 -2.5 560,899 - -1.0 560,944 - -1.5 560,945 + -1.0 560,945 + +0.4 560,945 + +0.2 561,085 + RR42_RS23315 0.14 +1.2 561,207 - RR42_RS23315 0.22 +1.1 561,356 - RR42_RS23315 0.32 -0.8 561,488 + RR42_RS23315 0.40 +0.1 561,489 - RR42_RS23315 0.40 -0.8 561,843 - RR42_RS23315 0.63 -0.6 562,155 - RR42_RS23315 0.83 -1.5 562,420 + -1.4 562,420 + +0.6 562,420 + +0.3 562,420 + +0.5 562,420 + -0.4 562,420 + -0.5 562,420 + +0.8 562,420 + +0.7 562,420 + -2.1 562,421 - -1.0 562,421 - -1.5 562,421 - +0.5 562,421 - -0.2 562,421 - +0.4 562,422 + +0.1 562,422 + +0.7 562,422 + +0.6 562,422 + -0.9 562,423 - +0.9 562,423 - -1.2 562,423 - +0.1 562,433 + +1.9 562,433 + -0.5 562,456 + -2.0 562,459 - +0.3 562,459 - -1.0 562,489 + +0.8 562,489 + -0.2 562,489 + +0.5 562,490 - -0.7 562,490 - +0.1 562,490 - +0.3 562,754 + RR42_RS23320 0.15 -0.9 562,754 + RR42_RS23320 0.15 -0.2 563,168 + RR42_RS23320 0.40 -0.2 563,168 + RR42_RS23320 0.40 -0.1 563,169 - RR42_RS23320 0.40 +0.5 563,169 - RR42_RS23320 0.40 -0.1 563,169 - RR42_RS23320 0.40 +0.8 563,319 - RR42_RS23320 0.49 -0.3
Or see this region's nucleotide sequence