Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22310 and RR42_RS22315 are separated by 202 nucleotides RR42_RS22315 and RR42_RS22320 are separated by 35 nucleotides RR42_RS22320 and RR42_RS22325 overlap by 4 nucleotides
RR42_RS22310: RR42_RS22310 - LysR family transcriptional regulator, at 346,289 to 347,188
_RS22310
RR42_RS22315: RR42_RS22315 - LysR family transcriptional regulator, at 347,391 to 347,831
_RS22315
RR42_RS22320: RR42_RS22320 - MFS transporter, at 347,867 to 349,171
_RS22320
RR42_RS22325: RR42_RS22325 - hypothetical protein, at 349,168 to 350,265
_RS22325
Position (kb) 347
348
349
350 Strain fitness (log2 ratio) -2
-1
0
1
2 at 347.069 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.200 kb on + strand at 347.219 kb on + strand at 347.219 kb on + strand at 347.254 kb on - strand at 347.259 kb on + strand at 347.545 kb on - strand, within RR42_RS22315 at 347.653 kb on + strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.675 kb on + strand, within RR42_RS22315 at 347.784 kb on + strand, within RR42_RS22315 at 347.785 kb on - strand, within RR42_RS22315 at 347.922 kb on + strand at 347.922 kb on + strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 348.354 kb on + strand, within RR42_RS22320 at 348.354 kb on + strand, within RR42_RS22320 at 348.354 kb on + strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.685 kb on - strand, within RR42_RS22320 at 348.732 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.751 kb on - strand, within RR42_RS22320 at 348.808 kb on - strand, within RR42_RS22320 at 348.808 kb on - strand, within RR42_RS22320 at 348.939 kb on + strand, within RR42_RS22320 at 348.940 kb on - strand, within RR42_RS22320 at 349.044 kb on + strand at 349.045 kb on - strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.057 kb on - strand at 349.057 kb on - strand at 349.068 kb on - strand at 349.355 kb on + strand, within RR42_RS22325 at 349.355 kb on + strand, within RR42_RS22325 at 349.355 kb on + strand, within RR42_RS22325 at 349.355 kb on + strand, within RR42_RS22325 at 349.356 kb on - strand, within RR42_RS22325 at 349.380 kb on + strand, within RR42_RS22325 at 349.465 kb on - strand, within RR42_RS22325 at 349.517 kb on + strand, within RR42_RS22325 at 349.647 kb on - strand, within RR42_RS22325 at 349.787 kb on + strand, within RR42_RS22325 at 349.787 kb on + strand, within RR42_RS22325 at 349.788 kb on - strand, within RR42_RS22325 at 349.788 kb on - strand, within RR42_RS22325 at 349.788 kb on - strand, within RR42_RS22325 at 349.797 kb on - strand, within RR42_RS22325 at 349.878 kb on + strand, within RR42_RS22325 at 349.879 kb on + strand, within RR42_RS22325 at 349.914 kb on - strand, within RR42_RS22325 at 350.051 kb on + strand, within RR42_RS22325 at 350.051 kb on + strand, within RR42_RS22325 at 350.051 kb on + strand, within RR42_RS22325 at 350.069 kb on + strand, within RR42_RS22325 at 350.070 kb on - strand, within RR42_RS22325
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml remove 347,069 - RR42_RS22310 0.87 -1.4 347,069 - RR42_RS22310 0.87 -1.9 347,070 + RR42_RS22310 0.87 -0.1 347,070 + RR42_RS22310 0.87 +0.6 347,071 - RR42_RS22310 0.87 +0.3 347,071 - RR42_RS22310 0.87 -0.4 347,200 + -0.1 347,219 + -1.1 347,219 + +0.0 347,254 - +0.3 347,259 + -0.7 347,545 - RR42_RS22315 0.35 +1.5 347,653 + RR42_RS22315 0.59 +0.3 347,654 - RR42_RS22315 0.60 +0.3 347,654 - RR42_RS22315 0.60 +2.1 347,654 - RR42_RS22315 0.60 +0.2 347,654 - RR42_RS22315 0.60 -0.9 347,675 + RR42_RS22315 0.64 -1.0 347,784 + RR42_RS22315 0.89 +0.4 347,785 - RR42_RS22315 0.89 -0.2 347,922 + -0.1 347,922 + -0.8 347,923 - +1.3 347,923 - +0.8 347,923 - -0.7 347,923 - +0.4 347,923 - +0.1 348,354 + RR42_RS22320 0.37 -0.7 348,354 + RR42_RS22320 0.37 -0.8 348,354 + RR42_RS22320 0.37 -0.2 348,355 - RR42_RS22320 0.37 +1.7 348,355 - RR42_RS22320 0.37 -1.2 348,355 - RR42_RS22320 0.37 -1.7 348,685 - RR42_RS22320 0.63 +1.0 348,732 + RR42_RS22320 0.66 -0.2 348,750 + RR42_RS22320 0.68 -0.6 348,750 + RR42_RS22320 0.68 -0.2 348,750 + RR42_RS22320 0.68 +0.2 348,751 - RR42_RS22320 0.68 -0.2 348,808 - RR42_RS22320 0.72 -1.1 348,808 - RR42_RS22320 0.72 -0.6 348,939 + RR42_RS22320 0.82 -0.7 348,940 - RR42_RS22320 0.82 -0.6 349,044 + +0.8 349,045 - +0.6 349,056 + -0.0 349,056 + -0.3 349,056 + -0.2 349,056 + -0.1 349,056 + +0.2 349,056 + +0.1 349,057 - +0.8 349,057 - -0.2 349,068 - +0.0 349,355 + RR42_RS22325 0.17 +0.8 349,355 + RR42_RS22325 0.17 +0.8 349,355 + RR42_RS22325 0.17 -0.7 349,355 + RR42_RS22325 0.17 +1.8 349,356 - RR42_RS22325 0.17 +0.1 349,380 + RR42_RS22325 0.19 +0.9 349,465 - RR42_RS22325 0.27 -0.8 349,517 + RR42_RS22325 0.32 +0.7 349,647 - RR42_RS22325 0.44 -1.0 349,787 + RR42_RS22325 0.56 -1.1 349,787 + RR42_RS22325 0.56 -0.1 349,788 - RR42_RS22325 0.56 -0.6 349,788 - RR42_RS22325 0.56 +0.7 349,788 - RR42_RS22325 0.56 +0.6 349,797 - RR42_RS22325 0.57 +0.6 349,878 + RR42_RS22325 0.65 +0.8 349,879 + RR42_RS22325 0.65 -0.1 349,914 - RR42_RS22325 0.68 +0.8 350,051 + RR42_RS22325 0.80 +0.4 350,051 + RR42_RS22325 0.80 -0.3 350,051 + RR42_RS22325 0.80 +0.4 350,069 + RR42_RS22325 0.82 -0.8 350,070 - RR42_RS22325 0.82 +0.9
Or see this region's nucleotide sequence