Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22220 and RR42_RS22225 overlap by 4 nucleotides RR42_RS22225 and RR42_RS22230 overlap by 4 nucleotides RR42_RS22230 and RR42_RS22235 are separated by 16 nucleotides
RR42_RS22220: RR42_RS22220 - cytochrome o ubiquinol oxidase subunit III, at 324,328 to 324,984
_RS22220
RR42_RS22225: RR42_RS22225 - cytochrome C oxidase subunit III, at 324,981 to 325,388
_RS22225
RR42_RS22230: RR42_RS22230 - hypothetical protein, at 325,385 to 326,239
_RS22230
RR42_RS22235: RR42_RS22235 - peptidase M19, at 326,256 to 326,885
_RS22235
Position (kb) 325
326
327 Strain fitness (log2 ratio) -1
0
1
2
3 at 324.398 kb on + strand, within RR42_RS22220 at 324.398 kb on + strand, within RR42_RS22220 at 324.399 kb on - strand, within RR42_RS22220 at 324.399 kb on - strand, within RR42_RS22220 at 324.406 kb on + strand, within RR42_RS22220 at 324.460 kb on + strand, within RR42_RS22220 at 324.461 kb on - strand, within RR42_RS22220 at 324.461 kb on - strand, within RR42_RS22220 at 324.505 kb on + strand, within RR42_RS22220 at 324.506 kb on - strand, within RR42_RS22220 at 324.506 kb on - strand, within RR42_RS22220 at 324.614 kb on - strand, within RR42_RS22220 at 324.614 kb on - strand, within RR42_RS22220 at 324.718 kb on + strand, within RR42_RS22220 at 324.718 kb on + strand, within RR42_RS22220 at 324.719 kb on - strand, within RR42_RS22220 at 324.719 kb on - strand, within RR42_RS22220 at 324.962 kb on - strand at 325.071 kb on - strand, within RR42_RS22225 at 325.087 kb on - strand, within RR42_RS22225 at 325.087 kb on - strand, within RR42_RS22225 at 325.225 kb on + strand, within RR42_RS22225 at 325.225 kb on + strand, within RR42_RS22225 at 325.225 kb on + strand, within RR42_RS22225 at 325.226 kb on - strand, within RR42_RS22225 at 325.228 kb on - strand, within RR42_RS22225 at 325.228 kb on - strand, within RR42_RS22225 at 325.228 kb on - strand, within RR42_RS22225 at 325.239 kb on - strand, within RR42_RS22225 at 325.976 kb on + strand, within RR42_RS22230 at 326.082 kb on - strand, within RR42_RS22230 at 326.133 kb on - strand, within RR42_RS22230 at 326.173 kb on + strand at 326.371 kb on + strand, within RR42_RS22235 at 326.372 kb on - strand, within RR42_RS22235 at 326.659 kb on + strand, within RR42_RS22235 at 326.659 kb on + strand, within RR42_RS22235 at 326.659 kb on + strand, within RR42_RS22235 at 326.659 kb on + strand, within RR42_RS22235 at 326.660 kb on - strand, within RR42_RS22235 at 326.660 kb on - strand, within RR42_RS22235 at 326.827 kb on + strand at 326.828 kb on - strand at 326.828 kb on - strand at 327.005 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml remove 324,398 + RR42_RS22220 0.11 -1.0 324,398 + RR42_RS22220 0.11 -0.9 324,399 - RR42_RS22220 0.11 -1.6 324,399 - RR42_RS22220 0.11 +0.5 324,406 + RR42_RS22220 0.12 +1.1 324,460 + RR42_RS22220 0.20 -0.4 324,461 - RR42_RS22220 0.20 -0.0 324,461 - RR42_RS22220 0.20 -0.1 324,505 + RR42_RS22220 0.27 +0.1 324,506 - RR42_RS22220 0.27 +1.0 324,506 - RR42_RS22220 0.27 +1.1 324,614 - RR42_RS22220 0.44 -0.1 324,614 - RR42_RS22220 0.44 -0.8 324,718 + RR42_RS22220 0.59 +0.5 324,718 + RR42_RS22220 0.59 -1.3 324,719 - RR42_RS22220 0.60 -1.6 324,719 - RR42_RS22220 0.60 +0.2 324,962 - +1.0 325,071 - RR42_RS22225 0.22 -0.0 325,087 - RR42_RS22225 0.26 -0.1 325,087 - RR42_RS22225 0.26 -1.4 325,225 + RR42_RS22225 0.60 +0.3 325,225 + RR42_RS22225 0.60 -0.3 325,225 + RR42_RS22225 0.60 -1.2 325,226 - RR42_RS22225 0.60 -0.8 325,228 - RR42_RS22225 0.61 -0.6 325,228 - RR42_RS22225 0.61 +0.3 325,228 - RR42_RS22225 0.61 -0.0 325,239 - RR42_RS22225 0.63 -0.2 325,976 + RR42_RS22230 0.69 +0.2 326,082 - RR42_RS22230 0.82 +1.4 326,133 - RR42_RS22230 0.87 +3.1 326,173 + -0.5 326,371 + RR42_RS22235 0.18 +0.7 326,372 - RR42_RS22235 0.18 +0.3 326,659 + RR42_RS22235 0.64 -0.6 326,659 + RR42_RS22235 0.64 -0.3 326,659 + RR42_RS22235 0.64 -0.9 326,659 + RR42_RS22235 0.64 +0.1 326,660 - RR42_RS22235 0.64 +0.5 326,660 - RR42_RS22235 0.64 -1.1 326,827 + +1.8 326,828 - +0.2 326,828 - -0.9 327,005 - +0.3
Or see this region's nucleotide sequence