Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21575

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21570 and RR42_RS21575 are separated by 125 nucleotidesRR42_RS21575 and RR42_RS21580 are separated by 34 nucleotides RR42_RS21570: RR42_RS21570 - membrane protein, at 164,956 to 166,104 _RS21570 RR42_RS21575: RR42_RS21575 - peptidase E, at 166,230 to 166,985 _RS21575 RR42_RS21580: RR42_RS21580 - cysteine desulfurase, at 167,020 to 168,204 _RS21580 Position (kb) 166 167Strain fitness (log2 ratio) -2 -1 0 1 2at 165.236 kb on + strand, within RR42_RS21570at 165.237 kb on - strand, within RR42_RS21570at 165.237 kb on - strand, within RR42_RS21570at 165.237 kb on - strand, within RR42_RS21570at 165.237 kb on - strand, within RR42_RS21570at 165.237 kb on - strand, within RR42_RS21570at 165.400 kb on - strand, within RR42_RS21570at 165.400 kb on - strand, within RR42_RS21570at 165.401 kb on + strand, within RR42_RS21570at 165.401 kb on + strand, within RR42_RS21570at 165.402 kb on - strand, within RR42_RS21570at 165.402 kb on - strand, within RR42_RS21570at 165.402 kb on - strand, within RR42_RS21570at 165.402 kb on - strand, within RR42_RS21570at 165.452 kb on + strand, within RR42_RS21570at 165.527 kb on + strand, within RR42_RS21570at 165.527 kb on + strand, within RR42_RS21570at 165.617 kb on + strand, within RR42_RS21570at 165.618 kb on - strand, within RR42_RS21570at 165.630 kb on - strand, within RR42_RS21570at 165.648 kb on - strand, within RR42_RS21570at 165.716 kb on + strand, within RR42_RS21570at 165.717 kb on - strand, within RR42_RS21570at 165.717 kb on - strand, within RR42_RS21570at 165.717 kb on - strand, within RR42_RS21570at 165.717 kb on - strand, within RR42_RS21570at 165.717 kb on - strand, within RR42_RS21570at 165.719 kb on + strand, within RR42_RS21570at 165.719 kb on + strand, within RR42_RS21570at 165.720 kb on - strand, within RR42_RS21570at 165.744 kb on - strand, within RR42_RS21570at 165.744 kb on - strand, within RR42_RS21570at 165.795 kb on - strand, within RR42_RS21570at 165.795 kb on - strand, within RR42_RS21570at 165.795 kb on - strand, within RR42_RS21570at 165.795 kb on - strand, within RR42_RS21570at 165.961 kb on - strand, within RR42_RS21570at 165.999 kb on - strandat 166.128 kb on - strandat 166.128 kb on - strandat 166.128 kb on - strandat 166.318 kb on - strand, within RR42_RS21575at 166.631 kb on - strand, within RR42_RS21575at 166.831 kb on + strand, within RR42_RS21575at 166.831 kb on + strand, within RR42_RS21575at 166.831 kb on + strand, within RR42_RS21575at 166.831 kb on + strand, within RR42_RS21575at 166.831 kb on + strand, within RR42_RS21575at 166.831 kb on + strand, within RR42_RS21575at 166.831 kb on + strand, within RR42_RS21575at 166.832 kb on - strand, within RR42_RS21575at 166.832 kb on - strand, within RR42_RS21575at 166.832 kb on - strand, within RR42_RS21575at 166.832 kb on - strand, within RR42_RS21575at 166.832 kb on - strand, within RR42_RS21575at 166.934 kb on - strandat 166.998 kb on + strandat 167.073 kb on + strandat 167.074 kb on - strandat 167.074 kb on - strandat 167.081 kb on + strandat 167.082 kb on - strandat 167.117 kb on + strandat 167.264 kb on + strand, within RR42_RS21580at 167.468 kb on + strand, within RR42_RS21580at 167.468 kb on + strand, within RR42_RS21580at 167.469 kb on - strand, within RR42_RS21580at 167.469 kb on - strand, within RR42_RS21580at 167.531 kb on + strand, within RR42_RS21580at 167.943 kb on + strand, within RR42_RS21580at 167.943 kb on + strand, within RR42_RS21580at 167.943 kb on + strand, within RR42_RS21580at 167.944 kb on - strand, within RR42_RS21580at 167.944 kb on - strand, within RR42_RS21580

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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165,236 + RR42_RS21570 0.24 +0.3
165,237 - RR42_RS21570 0.24 -0.6
165,237 - RR42_RS21570 0.24 +0.0
165,237 - RR42_RS21570 0.24 -0.2
165,237 - RR42_RS21570 0.24 +0.3
165,237 - RR42_RS21570 0.24 -0.4
165,400 - RR42_RS21570 0.39 -0.9
165,400 - RR42_RS21570 0.39 +1.9
165,401 + RR42_RS21570 0.39 +0.0
165,401 + RR42_RS21570 0.39 -1.1
165,402 - RR42_RS21570 0.39 +0.2
165,402 - RR42_RS21570 0.39 +0.9
165,402 - RR42_RS21570 0.39 -0.1
165,402 - RR42_RS21570 0.39 +0.7
165,452 + RR42_RS21570 0.43 +0.8
165,527 + RR42_RS21570 0.50 +0.1
165,527 + RR42_RS21570 0.50 -0.8
165,617 + RR42_RS21570 0.58 -0.1
165,618 - RR42_RS21570 0.58 +0.1
165,630 - RR42_RS21570 0.59 +0.6
165,648 - RR42_RS21570 0.60 -0.4
165,716 + RR42_RS21570 0.66 -0.6
165,717 - RR42_RS21570 0.66 +0.7
165,717 - RR42_RS21570 0.66 +0.5
165,717 - RR42_RS21570 0.66 +1.0
165,717 - RR42_RS21570 0.66 +0.4
165,717 - RR42_RS21570 0.66 +0.7
165,719 + RR42_RS21570 0.66 -0.8
165,719 + RR42_RS21570 0.66 -0.4
165,720 - RR42_RS21570 0.66 +0.1
165,744 - RR42_RS21570 0.69 +1.2
165,744 - RR42_RS21570 0.69 -0.6
165,795 - RR42_RS21570 0.73 +0.6
165,795 - RR42_RS21570 0.73 -0.3
165,795 - RR42_RS21570 0.73 -0.4
165,795 - RR42_RS21570 0.73 -0.2
165,961 - RR42_RS21570 0.87 -0.2
165,999 - -0.4
166,128 - -0.3
166,128 - -0.0
166,128 - +0.1
166,318 - RR42_RS21575 0.12 -1.8
166,631 - RR42_RS21575 0.53 -1.6
166,831 + RR42_RS21575 0.79 -1.1
166,831 + RR42_RS21575 0.79 -2.3
166,831 + RR42_RS21575 0.79 -0.0
166,831 + RR42_RS21575 0.79 -0.4
166,831 + RR42_RS21575 0.79 -0.4
166,831 + RR42_RS21575 0.79 +0.3
166,831 + RR42_RS21575 0.79 -1.3
166,832 - RR42_RS21575 0.80 -1.6
166,832 - RR42_RS21575 0.80 -0.9
166,832 - RR42_RS21575 0.80 +0.4
166,832 - RR42_RS21575 0.80 -0.4
166,832 - RR42_RS21575 0.80 +0.2
166,934 - +1.1
166,998 + +1.1
167,073 + -1.1
167,074 - -1.7
167,074 - +0.9
167,081 + -0.4
167,082 - +2.3
167,117 + -2.6
167,264 + RR42_RS21580 0.21 -2.3
167,468 + RR42_RS21580 0.38 +0.4
167,468 + RR42_RS21580 0.38 -0.1
167,469 - RR42_RS21580 0.38 -0.0
167,469 - RR42_RS21580 0.38 -0.7
167,531 + RR42_RS21580 0.43 -0.5
167,943 + RR42_RS21580 0.78 -1.2
167,943 + RR42_RS21580 0.78 -0.4
167,943 + RR42_RS21580 0.78 -0.0
167,944 - RR42_RS21580 0.78 -0.5
167,944 - RR42_RS21580 0.78 +0.6

Or see this region's nucleotide sequence