Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21010 and RR42_RS21015 are separated by 94 nucleotides RR42_RS21015 and RR42_RS21020 are separated by 230 nucleotides RR42_RS21020 and RR42_RS21025 are separated by 70 nucleotides
RR42_RS21010: RR42_RS21010 - GDP-mannose 4,6-dehydratase, at 41,844 to 42,956
_RS21010
RR42_RS21015: RR42_RS21015 - mannose-1-phosphate guanyltransferase, at 43,051 to 44,475
_RS21015
RR42_RS21020: RR42_RS21020 - hypothetical protein, at 44,706 to 45,038
_RS21020
RR42_RS21025: RR42_RS21025 - lipoprotein, at 45,109 to 45,228
_RS21025
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 42.226 kb on + strand, within RR42_RS21010 at 42.227 kb on - strand, within RR42_RS21010 at 42.227 kb on - strand, within RR42_RS21010 at 42.322 kb on + strand, within RR42_RS21010 at 42.322 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.440 kb on - strand, within RR42_RS21010 at 42.440 kb on - strand, within RR42_RS21010 at 42.460 kb on + strand, within RR42_RS21010 at 42.485 kb on - strand, within RR42_RS21010 at 42.502 kb on + strand, within RR42_RS21010 at 42.502 kb on + strand at 42.509 kb on + strand, within RR42_RS21010 at 42.586 kb on + strand, within RR42_RS21010 at 42.586 kb on + strand, within RR42_RS21010 at 42.670 kb on + strand, within RR42_RS21010 at 42.671 kb on - strand, within RR42_RS21010 at 42.830 kb on - strand, within RR42_RS21010 at 42.922 kb on + strand at 42.923 kb on - strand at 42.941 kb on + strand at 43.064 kb on + strand at 43.064 kb on + strand at 43.068 kb on + strand at 43.069 kb on - strand at 43.104 kb on - strand at 43.104 kb on - strand at 43.104 kb on - strand at 43.184 kb on + strand at 43.184 kb on + strand at 43.184 kb on + strand at 43.184 kb on + strand at 43.184 kb on + strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.211 kb on + strand, within RR42_RS21015 at 43.334 kb on + strand, within RR42_RS21015 at 43.382 kb on - strand, within RR42_RS21015 at 43.382 kb on - strand, within RR42_RS21015 at 43.382 kb on - strand, within RR42_RS21015 at 43.712 kb on + strand, within RR42_RS21015 at 43.850 kb on + strand, within RR42_RS21015 at 43.851 kb on - strand, within RR42_RS21015 at 43.996 kb on - strand, within RR42_RS21015 at 43.996 kb on - strand, within RR42_RS21015 at 43.997 kb on + strand, within RR42_RS21015 at 43.997 kb on + strand, within RR42_RS21015 at 44.452 kb on + strand at 44.582 kb on - strand at 44.824 kb on + strand, within RR42_RS21020 at 44.824 kb on + strand, within RR42_RS21020 at 44.825 kb on - strand, within RR42_RS21020 at 44.924 kb on + strand, within RR42_RS21020 at 44.941 kb on + strand, within RR42_RS21020 at 45.274 kb on + strand at 45.309 kb on + strand at 45.309 kb on + strand at 45.309 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml remove 42,226 + RR42_RS21010 0.34 +0.9 42,227 - RR42_RS21010 0.34 -0.3 42,227 - RR42_RS21010 0.34 -1.6 42,322 + RR42_RS21010 0.43 +0.1 42,322 + RR42_RS21010 0.43 +0.9 42,439 + RR42_RS21010 0.53 -0.1 42,439 + RR42_RS21010 0.53 -0.8 42,439 + RR42_RS21010 0.53 -0.7 42,439 + RR42_RS21010 0.53 +0.0 42,440 - RR42_RS21010 0.54 -1.5 42,440 - RR42_RS21010 0.54 -0.8 42,460 + RR42_RS21010 0.55 +1.2 42,485 - RR42_RS21010 0.58 -0.3 42,502 + RR42_RS21010 0.59 +0.1 42,502 + +1.9 42,509 + RR42_RS21010 0.60 -0.7 42,586 + RR42_RS21010 0.67 -0.5 42,586 + RR42_RS21010 0.67 +3.5 42,670 + RR42_RS21010 0.74 -0.2 42,671 - RR42_RS21010 0.74 +0.3 42,830 - RR42_RS21010 0.89 -0.1 42,922 + +0.5 42,923 - -0.1 42,941 + +0.3 43,064 + +0.2 43,064 + +0.5 43,068 + +1.2 43,069 - +0.6 43,104 - -1.8 43,104 - -0.1 43,104 - -0.4 43,184 + +0.5 43,184 + -0.4 43,184 + +0.4 43,184 + +0.2 43,184 + -0.3 43,185 - -2.3 43,185 - +0.8 43,185 - -0.9 43,185 - -0.5 43,211 + RR42_RS21015 0.11 +1.7 43,334 + RR42_RS21015 0.20 -1.3 43,382 - RR42_RS21015 0.23 -1.8 43,382 - RR42_RS21015 0.23 -2.4 43,382 - RR42_RS21015 0.23 -0.0 43,712 + RR42_RS21015 0.46 +0.5 43,850 + RR42_RS21015 0.56 -1.2 43,851 - RR42_RS21015 0.56 -0.5 43,996 - RR42_RS21015 0.66 -1.9 43,996 - RR42_RS21015 0.66 +0.6 43,997 + RR42_RS21015 0.66 +0.3 43,997 + RR42_RS21015 0.66 -0.7 44,452 + +0.9 44,582 - +1.9 44,824 + RR42_RS21020 0.35 -1.4 44,824 + RR42_RS21020 0.35 +0.2 44,825 - RR42_RS21020 0.36 +0.3 44,924 + RR42_RS21020 0.65 +1.9 44,941 + RR42_RS21020 0.71 -0.6 45,274 + +0.1 45,309 + +0.1 45,309 + -0.4 45,309 + -0.0
Or see this region's nucleotide sequence