Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20840

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS20830 and RR42_RS20835 are separated by 320 nucleotidesRR42_RS20835 and RR42_RS20840 are separated by 187 nucleotides RR42_RS20830: RR42_RS20830 - insertase, at 4,519,591 to 4,521,261 _RS20830 RR42_RS20835: RR42_RS20835 - ribonuclease P, at 4,521,582 to 4,521,974 _RS20835 RR42_RS20840: RR42_RS20840 - 50S ribosomal protein L34, at 4,522,162 to 4,522,296 _RS20840 Position (kb) 4522 4523Strain fitness (log2 ratio) -1 0 1at 4521.535 kb on - strandat 4521.535 kb on - strandat 4521.535 kb on - strandat 4521.535 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
remove
4,521,535 - +0.6
4,521,535 - -0.3
4,521,535 - +0.1
4,521,535 - +0.8

Or see this region's nucleotide sequence