Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18895 and RR42_RS18900 overlap by 4 nucleotides RR42_RS18900 and RR42_RS18905 are separated by 122 nucleotides RR42_RS18905 and RR42_RS18910 are separated by 4 nucleotides
RR42_RS18895: RR42_RS18895 - imidazole glycerol phosphate synthase, at 4,092,707 to 4,093,360
_RS18895
RR42_RS18900: RR42_RS18900 - membrane protein, at 4,093,357 to 4,093,980
_RS18900
RR42_RS18905: RR42_RS18905 - imidazoleglycerol-phosphate dehydratase, at 4,094,103 to 4,094,696
_RS18905
RR42_RS18910: RR42_RS18910 - histidinol-phosphate aminotransferase, at 4,094,701 to 4,095,801
_RS18910
Position (kb)
4094
4095 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4093.387 kb on - strand at 4093.387 kb on - strand at 4093.505 kb on - strand, within RR42_RS18900 at 4093.505 kb on - strand, within RR42_RS18900 at 4093.508 kb on - strand, within RR42_RS18900 at 4093.508 kb on - strand, within RR42_RS18900 at 4093.508 kb on - strand, within RR42_RS18900 at 4093.508 kb on - strand, within RR42_RS18900 at 4093.508 kb on - strand, within RR42_RS18900 at 4093.508 kb on - strand, within RR42_RS18900 at 4093.508 kb on - strand, within RR42_RS18900 at 4093.509 kb on + strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.510 kb on - strand, within RR42_RS18900 at 4093.512 kb on - strand, within RR42_RS18900 at 4093.512 kb on - strand, within RR42_RS18900 at 4093.512 kb on - strand, within RR42_RS18900 at 4093.512 kb on - strand, within RR42_RS18900 at 4093.512 kb on - strand, within RR42_RS18900 at 4093.512 kb on - strand, within RR42_RS18900 at 4093.512 kb on - strand, within RR42_RS18900 at 4093.514 kb on - strand, within RR42_RS18900 at 4093.514 kb on - strand, within RR42_RS18900 at 4093.514 kb on - strand, within RR42_RS18900 at 4093.514 kb on - strand, within RR42_RS18900 at 4093.514 kb on - strand, within RR42_RS18900 at 4093.587 kb on - strand, within RR42_RS18900 at 4093.625 kb on - strand, within RR42_RS18900 at 4093.785 kb on + strand, within RR42_RS18900 at 4093.785 kb on + strand, within RR42_RS18900 at 4093.785 kb on + strand, within RR42_RS18900 at 4093.786 kb on - strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.968 kb on + strand at 4093.968 kb on + strand at 4093.968 kb on + strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.975 kb on - strand at 4093.975 kb on - strand at 4093.991 kb on + strand at 4093.991 kb on + strand at 4093.992 kb on - strand at 4093.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml remove 4,093,387 - -1.7 4,093,387 - +0.5 4,093,505 - RR42_RS18900 0.24 +0.3 4,093,505 - RR42_RS18900 0.24 +0.6 4,093,508 - RR42_RS18900 0.24 -0.4 4,093,508 - RR42_RS18900 0.24 -0.3 4,093,508 - RR42_RS18900 0.24 -2.6 4,093,508 - RR42_RS18900 0.24 -0.3 4,093,508 - RR42_RS18900 0.24 -0.3 4,093,508 - RR42_RS18900 0.24 +0.6 4,093,508 - RR42_RS18900 0.24 -1.2 4,093,509 + RR42_RS18900 0.24 -0.8 4,093,510 - RR42_RS18900 0.25 -0.7 4,093,510 - RR42_RS18900 0.25 -0.2 4,093,510 - RR42_RS18900 0.25 -2.0 4,093,510 - RR42_RS18900 0.25 -0.7 4,093,510 - RR42_RS18900 0.25 +1.3 4,093,510 - RR42_RS18900 0.25 -0.6 4,093,510 - RR42_RS18900 0.25 -1.1 4,093,510 - RR42_RS18900 0.25 -0.8 4,093,510 - RR42_RS18900 0.25 -1.0 4,093,510 - RR42_RS18900 0.25 +0.4 4,093,510 - RR42_RS18900 0.25 -0.3 4,093,510 - RR42_RS18900 0.25 +0.3 4,093,510 - RR42_RS18900 0.25 -1.3 4,093,512 - RR42_RS18900 0.25 -0.2 4,093,512 - RR42_RS18900 0.25 -0.8 4,093,512 - RR42_RS18900 0.25 -1.3 4,093,512 - RR42_RS18900 0.25 -0.6 4,093,512 - RR42_RS18900 0.25 +1.4 4,093,512 - RR42_RS18900 0.25 -0.6 4,093,512 - RR42_RS18900 0.25 -1.6 4,093,514 - RR42_RS18900 0.25 -1.3 4,093,514 - RR42_RS18900 0.25 +0.9 4,093,514 - RR42_RS18900 0.25 +1.7 4,093,514 - RR42_RS18900 0.25 -0.9 4,093,514 - RR42_RS18900 0.25 -1.1 4,093,587 - RR42_RS18900 0.37 -1.2 4,093,625 - RR42_RS18900 0.43 +0.8 4,093,785 + RR42_RS18900 0.69 +0.3 4,093,785 + RR42_RS18900 0.69 +1.3 4,093,785 + RR42_RS18900 0.69 +1.0 4,093,786 - RR42_RS18900 0.69 +0.4 4,093,869 + RR42_RS18900 0.82 +0.4 4,093,869 + RR42_RS18900 0.82 -0.7 4,093,869 + RR42_RS18900 0.82 +0.3 4,093,869 + RR42_RS18900 0.82 +2.0 4,093,870 - RR42_RS18900 0.82 +1.0 4,093,870 - RR42_RS18900 0.82 +1.3 4,093,870 - RR42_RS18900 0.82 +0.2 4,093,870 - RR42_RS18900 0.82 +0.8 4,093,870 - RR42_RS18900 0.82 -0.7 4,093,968 + +0.8 4,093,968 + +1.2 4,093,968 + -0.2 4,093,969 - -0.5 4,093,969 - +0.4 4,093,969 - -1.3 4,093,969 - +0.7 4,093,969 - +0.2 4,093,975 - +1.0 4,093,975 - +0.2 4,093,991 + -1.1 4,093,991 + -0.0 4,093,992 - +0.4 4,093,992 - +1.0
Or see this region's nucleotide sequence