Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18905

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18895 and RR42_RS18900 overlap by 4 nucleotidesRR42_RS18900 and RR42_RS18905 are separated by 122 nucleotidesRR42_RS18905 and RR42_RS18910 are separated by 4 nucleotides RR42_RS18895: RR42_RS18895 - imidazole glycerol phosphate synthase, at 4,092,707 to 4,093,360 _RS18895 RR42_RS18900: RR42_RS18900 - membrane protein, at 4,093,357 to 4,093,980 _RS18900 RR42_RS18905: RR42_RS18905 - imidazoleglycerol-phosphate dehydratase, at 4,094,103 to 4,094,696 _RS18905 RR42_RS18910: RR42_RS18910 - histidinol-phosphate aminotransferase, at 4,094,701 to 4,095,801 _RS18910 Position (kb) 4094 4095Strain fitness (log2 ratio) -2 -1 0 1 2at 4093.387 kb on - strandat 4093.387 kb on - strandat 4093.505 kb on - strand, within RR42_RS18900at 4093.505 kb on - strand, within RR42_RS18900at 4093.508 kb on - strand, within RR42_RS18900at 4093.508 kb on - strand, within RR42_RS18900at 4093.508 kb on - strand, within RR42_RS18900at 4093.508 kb on - strand, within RR42_RS18900at 4093.508 kb on - strand, within RR42_RS18900at 4093.508 kb on - strand, within RR42_RS18900at 4093.508 kb on - strand, within RR42_RS18900at 4093.509 kb on + strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.510 kb on - strand, within RR42_RS18900at 4093.512 kb on - strand, within RR42_RS18900at 4093.512 kb on - strand, within RR42_RS18900at 4093.512 kb on - strand, within RR42_RS18900at 4093.512 kb on - strand, within RR42_RS18900at 4093.512 kb on - strand, within RR42_RS18900at 4093.512 kb on - strand, within RR42_RS18900at 4093.512 kb on - strand, within RR42_RS18900at 4093.514 kb on - strand, within RR42_RS18900at 4093.514 kb on - strand, within RR42_RS18900at 4093.514 kb on - strand, within RR42_RS18900at 4093.514 kb on - strand, within RR42_RS18900at 4093.514 kb on - strand, within RR42_RS18900at 4093.587 kb on - strand, within RR42_RS18900at 4093.625 kb on - strand, within RR42_RS18900at 4093.785 kb on + strand, within RR42_RS18900at 4093.785 kb on + strand, within RR42_RS18900at 4093.785 kb on + strand, within RR42_RS18900at 4093.786 kb on - strand, within RR42_RS18900at 4093.869 kb on + strand, within RR42_RS18900at 4093.869 kb on + strand, within RR42_RS18900at 4093.869 kb on + strand, within RR42_RS18900at 4093.869 kb on + strand, within RR42_RS18900at 4093.870 kb on - strand, within RR42_RS18900at 4093.870 kb on - strand, within RR42_RS18900at 4093.870 kb on - strand, within RR42_RS18900at 4093.870 kb on - strand, within RR42_RS18900at 4093.870 kb on - strand, within RR42_RS18900at 4093.968 kb on + strandat 4093.968 kb on + strandat 4093.968 kb on + strandat 4093.969 kb on - strandat 4093.969 kb on - strandat 4093.969 kb on - strandat 4093.969 kb on - strandat 4093.969 kb on - strandat 4093.975 kb on - strandat 4093.975 kb on - strandat 4093.991 kb on + strandat 4093.991 kb on + strandat 4093.992 kb on - strandat 4093.992 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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4,093,387 - -1.7
4,093,387 - +0.5
4,093,505 - RR42_RS18900 0.24 +0.3
4,093,505 - RR42_RS18900 0.24 +0.6
4,093,508 - RR42_RS18900 0.24 -0.4
4,093,508 - RR42_RS18900 0.24 -0.3
4,093,508 - RR42_RS18900 0.24 -2.6
4,093,508 - RR42_RS18900 0.24 -0.3
4,093,508 - RR42_RS18900 0.24 -0.3
4,093,508 - RR42_RS18900 0.24 +0.6
4,093,508 - RR42_RS18900 0.24 -1.2
4,093,509 + RR42_RS18900 0.24 -0.8
4,093,510 - RR42_RS18900 0.25 -0.7
4,093,510 - RR42_RS18900 0.25 -0.2
4,093,510 - RR42_RS18900 0.25 -2.0
4,093,510 - RR42_RS18900 0.25 -0.7
4,093,510 - RR42_RS18900 0.25 +1.3
4,093,510 - RR42_RS18900 0.25 -0.6
4,093,510 - RR42_RS18900 0.25 -1.1
4,093,510 - RR42_RS18900 0.25 -0.8
4,093,510 - RR42_RS18900 0.25 -1.0
4,093,510 - RR42_RS18900 0.25 +0.4
4,093,510 - RR42_RS18900 0.25 -0.3
4,093,510 - RR42_RS18900 0.25 +0.3
4,093,510 - RR42_RS18900 0.25 -1.3
4,093,512 - RR42_RS18900 0.25 -0.2
4,093,512 - RR42_RS18900 0.25 -0.8
4,093,512 - RR42_RS18900 0.25 -1.3
4,093,512 - RR42_RS18900 0.25 -0.6
4,093,512 - RR42_RS18900 0.25 +1.4
4,093,512 - RR42_RS18900 0.25 -0.6
4,093,512 - RR42_RS18900 0.25 -1.6
4,093,514 - RR42_RS18900 0.25 -1.3
4,093,514 - RR42_RS18900 0.25 +0.9
4,093,514 - RR42_RS18900 0.25 +1.7
4,093,514 - RR42_RS18900 0.25 -0.9
4,093,514 - RR42_RS18900 0.25 -1.1
4,093,587 - RR42_RS18900 0.37 -1.2
4,093,625 - RR42_RS18900 0.43 +0.8
4,093,785 + RR42_RS18900 0.69 +0.3
4,093,785 + RR42_RS18900 0.69 +1.3
4,093,785 + RR42_RS18900 0.69 +1.0
4,093,786 - RR42_RS18900 0.69 +0.4
4,093,869 + RR42_RS18900 0.82 +0.4
4,093,869 + RR42_RS18900 0.82 -0.7
4,093,869 + RR42_RS18900 0.82 +0.3
4,093,869 + RR42_RS18900 0.82 +2.0
4,093,870 - RR42_RS18900 0.82 +1.0
4,093,870 - RR42_RS18900 0.82 +1.3
4,093,870 - RR42_RS18900 0.82 +0.2
4,093,870 - RR42_RS18900 0.82 +0.8
4,093,870 - RR42_RS18900 0.82 -0.7
4,093,968 + +0.8
4,093,968 + +1.2
4,093,968 + -0.2
4,093,969 - -0.5
4,093,969 - +0.4
4,093,969 - -1.3
4,093,969 - +0.7
4,093,969 - +0.2
4,093,975 - +1.0
4,093,975 - +0.2
4,093,991 + -1.1
4,093,991 + -0.0
4,093,992 - +0.4
4,093,992 - +1.0

Or see this region's nucleotide sequence