Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15665

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15655 and RR42_RS15660 are separated by 220 nucleotidesRR42_RS15660 and RR42_RS15665 are separated by 14 nucleotidesRR42_RS15665 and RR42_RS15670 are separated by 134 nucleotides RR42_RS15655: RR42_RS15655 - nodulation protein NolG, at 3,380,081 to 3,383,287 _RS15655 RR42_RS15660: RR42_RS15660 - protein-L-isoaspartate O-methyltransferase, at 3,383,508 to 3,384,161 _RS15660 RR42_RS15665: RR42_RS15665 - sulfurtransferase, at 3,384,176 to 3,384,499 _RS15665 RR42_RS15670: RR42_RS15670 - channel protein TolC, at 3,384,634 to 3,386,121 _RS15670 Position (kb) 3384 3385Strain fitness (log2 ratio) -3 -2 -1 0 1at 3383.323 kb on - strandat 3383.415 kb on - strandat 3383.419 kb on + strandat 3383.419 kb on + strandat 3383.419 kb on + strandat 3383.479 kb on + strandat 3384.184 kb on - strandat 3384.184 kb on - strandat 3384.252 kb on + strand, within RR42_RS15665at 3384.302 kb on - strand, within RR42_RS15665at 3384.355 kb on + strand, within RR42_RS15665at 3384.355 kb on + strand, within RR42_RS15665at 3384.356 kb on - strand, within RR42_RS15665at 3384.356 kb on - strand, within RR42_RS15665at 3384.356 kb on - strand, within RR42_RS15665at 3384.434 kb on + strand, within RR42_RS15665at 3384.435 kb on - strand, within RR42_RS15665at 3384.435 kb on - strand, within RR42_RS15665at 3384.494 kb on + strandat 3384.495 kb on - strandat 3384.707 kb on + strandat 3384.708 kb on - strandat 3384.752 kb on - strandat 3384.870 kb on - strand, within RR42_RS15670at 3384.936 kb on + strand, within RR42_RS15670at 3384.936 kb on + strand, within RR42_RS15670at 3384.937 kb on - strand, within RR42_RS15670at 3384.937 kb on - strand, within RR42_RS15670at 3384.937 kb on - strand, within RR42_RS15670at 3384.992 kb on - strand, within RR42_RS15670at 3384.992 kb on - strand, within RR42_RS15670at 3384.992 kb on - strand, within RR42_RS15670at 3384.992 kb on - strand, within RR42_RS15670at 3385.060 kb on - strand, within RR42_RS15670at 3385.078 kb on + strand, within RR42_RS15670at 3385.112 kb on - strand, within RR42_RS15670at 3385.223 kb on - strand, within RR42_RS15670at 3385.223 kb on - strand, within RR42_RS15670at 3385.427 kb on - strand, within RR42_RS15670at 3385.454 kb on - strand, within RR42_RS15670

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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3,383,323 - -0.5
3,383,415 - -0.4
3,383,419 + +0.5
3,383,419 + -1.3
3,383,419 + +0.2
3,383,479 + -0.4
3,384,184 - +0.6
3,384,184 - +0.2
3,384,252 + RR42_RS15665 0.23 +0.5
3,384,302 - RR42_RS15665 0.39 -1.3
3,384,355 + RR42_RS15665 0.55 -1.3
3,384,355 + RR42_RS15665 0.55 -0.8
3,384,356 - RR42_RS15665 0.56 -1.6
3,384,356 - RR42_RS15665 0.56 -3.0
3,384,356 - RR42_RS15665 0.56 -2.4
3,384,434 + RR42_RS15665 0.80 -1.0
3,384,435 - RR42_RS15665 0.80 +0.2
3,384,435 - RR42_RS15665 0.80 +1.0
3,384,494 + +0.1
3,384,495 - -0.3
3,384,707 + +0.4
3,384,708 - -1.3
3,384,752 - -0.2
3,384,870 - RR42_RS15670 0.16 +0.1
3,384,936 + RR42_RS15670 0.20 +0.1
3,384,936 + RR42_RS15670 0.20 -0.2
3,384,937 - RR42_RS15670 0.20 +0.1
3,384,937 - RR42_RS15670 0.20 -1.5
3,384,937 - RR42_RS15670 0.20 -1.0
3,384,992 - RR42_RS15670 0.24 +0.8
3,384,992 - RR42_RS15670 0.24 +0.6
3,384,992 - RR42_RS15670 0.24 +0.2
3,384,992 - RR42_RS15670 0.24 +0.4
3,385,060 - RR42_RS15670 0.29 -0.2
3,385,078 + RR42_RS15670 0.30 -0.2
3,385,112 - RR42_RS15670 0.32 -1.5
3,385,223 - RR42_RS15670 0.40 +0.7
3,385,223 - RR42_RS15670 0.40 -0.1
3,385,427 - RR42_RS15670 0.53 -0.7
3,385,454 - RR42_RS15670 0.55 +0.8

Or see this region's nucleotide sequence