Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15175
Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Thallium(I) acetate 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,285,501 | + | RR42_RS15170 | 0.64 | -0.8 | |
3,285,501 | + | RR42_RS15170 | 0.64 | -0.4 | |
3,285,546 | - | RR42_RS15170 | 0.67 | -0.9 | |
3,285,700 | + | RR42_RS15170 | 0.76 | -0.5 | |
3,285,700 | + | RR42_RS15170 | 0.76 | -0.4 | |
3,285,701 | - | RR42_RS15170 | 0.76 | +1.5 | |
3,285,956 | - | +0.5 | |||
3,286,005 | - | -0.8 | |||
3,286,219 | + | -0.1 | |||
3,286,219 | + | +0.8 | |||
3,286,267 | + | -0.0 | |||
3,286,276 | - | +0.4 | |||
3,286,313 | + | +0.4 | |||
3,286,313 | + | +2.8 | |||
3,286,334 | - | -1.4 | |||
3,286,522 | + | RR42_RS15175 | 0.18 | +0.6 | |
3,286,898 | - | +0.3 | |||
3,286,911 | + | +0.8 | |||
3,286,912 | - | +0.7 | |||
3,286,919 | + | -0.5 | |||
3,286,919 | + | -1.1 | |||
3,286,919 | + | +0.6 | |||
3,286,920 | - | -1.8 | |||
3,286,922 | + | +0.8 | |||
3,286,922 | + | -0.0 | |||
3,286,923 | - | -1.2 | |||
3,286,976 | - | +0.7 | |||
3,287,203 | + | RR42_RS15180 | 0.19 | -0.4 | |
3,287,746 | + | RR42_RS15180 | 0.55 | +0.2 |
Or see this region's nucleotide sequence