Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14930

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14920 and RR42_RS14925 are separated by 74 nucleotidesRR42_RS14925 and RR42_RS14930 are separated by 52 nucleotidesRR42_RS14930 and RR42_RS14935 are separated by 15 nucleotides RR42_RS14920: RR42_RS14920 - membrane protein, at 3,226,116 to 3,227,891 _RS14920 RR42_RS14925: RR42_RS14925 - hypothetical protein, at 3,227,966 to 3,228,634 _RS14925 RR42_RS14930: RR42_RS14930 - biopolymer transporter ExbD, at 3,228,687 to 3,229,097 _RS14930 RR42_RS14935: RR42_RS14935 - biopolymer transporter ExbB, at 3,229,113 to 3,230,912 _RS14935 Position (kb) 3228 3229 3230Strain fitness (log2 ratio) -1 0 1at 3227.907 kb on + strandat 3227.907 kb on + strandat 3228.220 kb on - strand, within RR42_RS14925at 3228.220 kb on - strand, within RR42_RS14925at 3228.220 kb on - strand, within RR42_RS14925at 3228.228 kb on + strand, within RR42_RS14925at 3228.476 kb on - strand, within RR42_RS14925at 3228.769 kb on + strand, within RR42_RS14930at 3228.769 kb on + strand, within RR42_RS14930at 3228.770 kb on - strand, within RR42_RS14930at 3229.090 kb on + strandat 3229.090 kb on + strandat 3229.244 kb on - strandat 3229.579 kb on + strand, within RR42_RS14935at 3229.579 kb on + strand, within RR42_RS14935

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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3,227,907 + -0.2
3,227,907 + +0.1
3,228,220 - RR42_RS14925 0.38 -0.2
3,228,220 - RR42_RS14925 0.38 +0.1
3,228,220 - RR42_RS14925 0.38 -1.5
3,228,228 + RR42_RS14925 0.39 +1.7
3,228,476 - RR42_RS14925 0.76 -0.7
3,228,769 + RR42_RS14930 0.20 +0.3
3,228,769 + RR42_RS14930 0.20 -0.7
3,228,770 - RR42_RS14930 0.20 -0.2
3,229,090 + -0.9
3,229,090 + +0.1
3,229,244 - -1.1
3,229,579 + RR42_RS14935 0.26 -0.5
3,229,579 + RR42_RS14935 0.26 +0.4

Or see this region's nucleotide sequence