Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11845

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11840 and RR42_RS11845 are separated by 138 nucleotidesRR42_RS11845 and RR42_RS11850 are separated by 11 nucleotidesRR42_RS11850 and RR42_RS11855 are separated by 37 nucleotides RR42_RS11840: RR42_RS11840 - zinc metalloprotease, at 2,531,635 to 2,533,026 _RS11840 RR42_RS11845: RR42_RS11845 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,533,165 to 2,534,343 _RS11845 RR42_RS11850: RR42_RS11850 - phosphatidate cytidylyltransferase, at 2,534,355 to 2,535,176 _RS11850 RR42_RS11855: RR42_RS11855 - UDP diphosphate synthase, at 2,535,214 to 2,535,987 _RS11855 Position (kb) 2533 2534 2535Strain fitness (log2 ratio) -1 0 1 2at 2532.668 kb on + strand, within RR42_RS11840at 2532.827 kb on + strand, within RR42_RS11840at 2532.959 kb on + strandat 2532.959 kb on + strandat 2532.959 kb on + strandat 2532.981 kb on - strandat 2533.015 kb on + strandat 2533.074 kb on + strandat 2533.074 kb on + strandat 2533.131 kb on - strandat 2534.363 kb on - strandat 2534.363 kb on - strandat 2534.363 kb on - strandat 2534.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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2,532,668 + RR42_RS11840 0.74 +0.9
2,532,827 + RR42_RS11840 0.86 +0.3
2,532,959 + -0.1
2,532,959 + -0.4
2,532,959 + -1.0
2,532,981 - +0.3
2,533,015 + +0.5
2,533,074 + -0.1
2,533,074 + -0.0
2,533,131 - +0.6
2,534,363 - +1.1
2,534,363 - +1.8
2,534,363 - -0.1
2,534,363 - +0.7

Or see this region's nucleotide sequence